Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00800 and LRK54_RS00805 are separated by 900 nucleotides LRK54_RS00805 and LRK54_RS00810 are separated by 50 nucleotides LRK54_RS00810 and LRK54_RS00815 overlap by 4 nucleotides
LRK54_RS00800: LRK54_RS00800 - PilZ domain-containing protein, at 180,255 to 180,623
_RS00800
LRK54_RS00805: LRK54_RS00805 - segregation/condensation protein A, at 181,524 to 182,456
_RS00805
LRK54_RS00810: LRK54_RS00810 - SMC-Scp complex subunit ScpB, at 182,507 to 183,328
_RS00810
LRK54_RS00815: LRK54_RS00815 - pseudouridine synthase, at 183,325 to 184,842
_RS00815
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.611 kb on + strand at 180.611 kb on + strand at 180.611 kb on + strand at 180.611 kb on + strand at 180.612 kb on - strand at 180.612 kb on - strand at 180.612 kb on - strand at 180.612 kb on - strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.643 kb on + strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.644 kb on - strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.013 kb on + strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.014 kb on - strand at 181.122 kb on + strand at 181.123 kb on - strand at 181.123 kb on - strand at 181.123 kb on - strand at 181.123 kb on - strand at 181.123 kb on - strand at 181.399 kb on + strand at 181.400 kb on - strand at 181.588 kb on + strand at 181.588 kb on + strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.589 kb on - strand at 181.659 kb on + strand, within LRK54_RS00805 at 182.353 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 182.355 kb on + strand, within LRK54_RS00805 at 183.155 kb on + strand, within LRK54_RS00810 at 183.155 kb on + strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.156 kb on - strand, within LRK54_RS00810 at 183.317 kb on + strand at 183.318 kb on - strand at 183.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM remove 180,611 + -1.0 180,611 + -0.3 180,611 + -0.3 180,611 + -1.1 180,612 - +0.1 180,612 - -0.6 180,612 - -2.2 180,612 - -0.5 180,643 + -1.7 180,643 + -0.8 180,643 + -1.0 180,643 + +0.3 180,643 + -0.1 180,643 + -0.0 180,643 + +1.2 180,643 + -1.9 180,643 + +0.5 180,643 + +0.9 180,643 + -0.7 180,643 + +0.0 180,643 + -0.0 180,643 + -2.5 180,643 + +0.4 180,644 - +0.5 180,644 - -1.0 180,644 - -1.7 180,644 - +0.1 180,644 - -0.7 180,644 - -0.1 180,644 - -0.9 180,644 - -0.5 180,644 - +0.4 180,644 - +0.3 180,644 - +0.7 180,644 - +0.9 180,644 - +0.4 180,644 - +0.9 180,644 - +0.3 180,644 - +0.3 180,644 - +0.7 180,644 - -0.0 180,644 - +1.2 180,644 - -0.2 180,644 - -0.9 180,951 + -0.1 180,951 + -1.3 180,951 + -0.3 180,951 + -0.1 180,951 + +0.5 180,951 + -1.3 180,951 + -0.9 180,951 + -2.0 180,951 + +0.8 180,951 + -0.3 180,951 + +0.6 180,951 + -1.2 180,951 + -0.0 180,951 + -0.2 180,951 + -1.1 180,951 + -1.3 180,951 + +0.5 180,951 + +0.0 180,951 + -0.4 180,951 + -0.8 180,951 + +0.9 180,951 + +0.3 180,951 + -1.0 180,952 - +1.2 180,952 - +1.6 180,952 - +0.4 180,952 - -0.4 180,952 - +0.7 180,952 - -0.0 180,952 - -0.6 180,952 - -0.1 180,952 - -1.2 180,952 - -0.6 180,952 - +0.1 180,952 - +0.6 180,952 - -0.3 180,952 - -0.2 180,952 - +0.9 180,952 - -1.5 180,952 - -0.8 180,952 - -0.8 180,952 - +1.2 180,952 - +0.9 180,952 - -0.1 180,952 - +1.1 180,952 - -0.3 180,952 - -0.3 180,952 - +1.0 180,952 - +1.0 181,013 + +1.5 181,013 + -0.0 181,013 + -0.3 181,013 + -1.7 181,013 + +1.7 181,013 + -1.5 181,013 + +0.7 181,013 + +0.6 181,013 + -1.1 181,013 + -0.1 181,013 + -0.3 181,013 + -0.2 181,013 + -0.1 181,013 + +0.9 181,013 + -0.4 181,013 + +0.6 181,013 + -1.2 181,014 - +1.5 181,014 - +0.3 181,014 - +0.5 181,014 - +0.4 181,014 - -1.3 181,014 - -0.4 181,014 - +2.1 181,014 - +0.4 181,014 - +0.2 181,014 - +0.7 181,014 - +1.5 181,014 - +0.2 181,014 - -0.0 181,122 + -0.3 181,123 - -0.2 181,123 - -1.7 181,123 - -1.9 181,123 - +0.8 181,123 - -1.1 181,399 + -1.2 181,400 - -0.6 181,588 + +1.2 181,588 + +0.8 181,589 - +0.5 181,589 - +1.5 181,589 - +0.9 181,589 - -0.3 181,659 + LRK54_RS00805 0.14 -0.1 182,353 + LRK54_RS00805 0.89 +0.5 182,355 + LRK54_RS00805 0.89 -0.8 182,355 + LRK54_RS00805 0.89 +0.9 182,355 + LRK54_RS00805 0.89 -0.5 182,355 + LRK54_RS00805 0.89 -0.1 182,355 + LRK54_RS00805 0.89 +1.5 182,355 + LRK54_RS00805 0.89 +0.5 182,355 + LRK54_RS00805 0.89 -1.0 182,355 + LRK54_RS00805 0.89 +0.5 182,355 + LRK54_RS00805 0.89 -0.6 182,355 + LRK54_RS00805 0.89 +0.5 182,355 + LRK54_RS00805 0.89 -2.1 182,355 + LRK54_RS00805 0.89 -1.1 182,355 + LRK54_RS00805 0.89 -1.3 182,355 + LRK54_RS00805 0.89 +0.5 182,355 + LRK54_RS00805 0.89 +0.2 182,355 + LRK54_RS00805 0.89 -0.6 182,355 + LRK54_RS00805 0.89 +1.8 182,355 + LRK54_RS00805 0.89 -1.0 182,355 + LRK54_RS00805 0.89 +0.7 182,355 + LRK54_RS00805 0.89 -0.1 182,355 + LRK54_RS00805 0.89 +0.5 183,155 + LRK54_RS00810 0.79 -1.2 183,155 + LRK54_RS00810 0.79 +0.8 183,156 - LRK54_RS00810 0.79 +0.1 183,156 - LRK54_RS00810 0.79 -2.0 183,156 - LRK54_RS00810 0.79 -0.7 183,156 - LRK54_RS00810 0.79 -0.2 183,156 - LRK54_RS00810 0.79 -0.4 183,156 - LRK54_RS00810 0.79 -1.2 183,156 - LRK54_RS00810 0.79 -2.0 183,156 - LRK54_RS00810 0.79 -0.2 183,317 + +1.1 183,318 - -1.0 183,318 - +1.6
Or see this region's nucleotide sequence