Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00365

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS00350 and LRK54_RS00355 are separated by 91 nucleotidesLRK54_RS00355 and LRK54_RS00360 are separated by 303 nucleotidesLRK54_RS00360 and LRK54_RS00365 are separated by 83 nucleotidesLRK54_RS00365 and LRK54_RS00370 are separated by 129 nucleotidesLRK54_RS00370 and LRK54_RS00375 are separated by 66 nucleotidesLRK54_RS00375 and LRK54_RS00380 are separated by 72 nucleotides LRK54_RS00350: LRK54_RS00350 - tRNA-Leu, at 80,040 to 80,126 _RS00350 LRK54_RS00355: LRK54_RS00355 - HU family DNA-binding protein, at 80,218 to 80,598 _RS00355 LRK54_RS00360: LRK54_RS00360 - tRNA-Cys, at 80,902 to 80,975 _RS00360 LRK54_RS00365: LRK54_RS00365 - tRNA-Gly, at 81,059 to 81,134 _RS00365 LRK54_RS00370: LRK54_RS00370 - tRNA-Gly, at 81,264 to 81,339 _RS00370 LRK54_RS00375: LRK54_RS00375 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 81,406 to 82,008 _RS00375 LRK54_RS00380: LRK54_RS00380 - excinuclease ABC subunit UvrC, at 82,081 to 83,907 _RS00380 Position (kb) 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.616 kb on + strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.617 kb on - strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.634 kb on + strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.635 kb on - strandat 80.657 kb on + strandat 80.658 kb on - strandat 80.658 kb on - strandat 80.750 kb on + strandat 80.751 kb on - strandat 80.751 kb on - strandat 80.751 kb on - strandat 80.751 kb on - strandat 80.751 kb on - strandat 81.019 kb on - strandat 81.115 kb on - strand, within LRK54_RS00365at 81.127 kb on - strandat 81.127 kb on - strandat 81.127 kb on - strandat 81.127 kb on - strandat 81.177 kb on - strandat 81.177 kb on - strandat 81.177 kb on - strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.223 kb on + strandat 81.224 kb on - strandat 81.224 kb on - strandat 81.224 kb on - strandat 81.224 kb on - strandat 81.224 kb on - strandat 81.224 kb on - strandat 81.358 kb on - strandat 81.358 kb on - strandat 81.358 kb on - strandat 81.358 kb on - strandat 81.361 kb on - strandat 81.361 kb on - strandat 81.361 kb on - strandat 81.361 kb on - strandat 81.361 kb on - strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.100 kb on + strandat 82.101 kb on - strandat 82.101 kb on - strandat 82.101 kb on - strandat 82.101 kb on - strandat 82.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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80,616 + -0.7
80,616 + -1.0
80,616 + -0.7
80,616 + -0.1
80,616 + -2.0
80,616 + -0.6
80,616 + -0.2
80,616 + +0.2
80,616 + +0.8
80,616 + +1.1
80,616 + -1.3
80,616 + +1.0
80,616 + -2.3
80,616 + -0.3
80,616 + +1.8
80,616 + +0.3
80,616 + -0.1
80,616 + -1.0
80,616 + +1.0
80,616 + -0.3
80,616 + -0.1
80,617 - -0.1
80,617 - -0.5
80,617 - -0.4
80,617 - -0.7
80,617 - -0.7
80,617 - -0.2
80,617 - -0.1
80,617 - +0.3
80,617 - +0.8
80,617 - -2.0
80,617 - -2.7
80,617 - -1.2
80,617 - -1.7
80,617 - -0.5
80,617 - -0.6
80,617 - +2.5
80,617 - -0.6
80,634 + -0.8
80,634 + -2.4
80,634 + -2.0
80,634 + -1.4
80,634 + -0.8
80,634 + -0.0
80,634 + -2.6
80,634 + +0.7
80,634 + -0.1
80,634 + +0.1
80,634 + -1.6
80,634 + -0.0
80,634 + -0.4
80,634 + +1.5
80,634 + -0.5
80,634 + -0.5
80,634 + +0.8
80,635 - -1.1
80,635 - -0.8
80,635 - -0.5
80,635 - -3.3
80,635 - -0.8
80,635 - -0.7
80,635 - -1.8
80,635 - -1.7
80,635 - -0.2
80,635 - +0.9
80,635 - -0.4
80,635 - -2.2
80,635 - -0.5
80,635 - +1.9
80,635 - +0.1
80,635 - -1.0
80,635 - -1.9
80,657 + -1.3
80,658 - +1.1
80,658 - -2.2
80,750 + -0.7
80,751 - -0.3
80,751 - -1.2
80,751 - +1.3
80,751 - -0.6
80,751 - -0.1
81,019 - -0.5
81,115 - LRK54_RS00365 0.74 +0.2
81,127 - +1.5
81,127 - -1.3
81,127 - +0.2
81,127 - -0.1
81,177 - +1.9
81,177 - -1.6
81,177 - +0.1
81,223 + -1.9
81,223 + -0.2
81,223 + +0.8
81,223 + +0.9
81,223 + -1.9
81,223 + -0.5
81,223 + -1.6
81,223 + -0.6
81,223 + -1.5
81,223 + -1.6
81,223 + +1.2
81,223 + -1.3
81,223 + -0.1
81,224 - -0.8
81,224 - +0.4
81,224 - -1.8
81,224 - -0.8
81,224 - +1.1
81,224 - +0.2
81,358 - +2.3
81,358 - +1.5
81,358 - -0.9
81,358 - -1.8
81,361 - -0.7
81,361 - -1.2
81,361 - +0.9
81,361 - -0.8
81,361 - -1.3
82,100 + +1.6
82,100 + +0.0
82,100 + -0.3
82,100 + -0.1
82,100 + +1.1
82,100 + +0.2
82,100 + -2.5
82,100 + -0.1
82,100 + -0.7
82,100 + +0.3
82,100 + -1.8
82,100 + -0.8
82,101 - -1.8
82,101 - -1.9
82,101 - -1.5
82,101 - +2.5
82,101 - +0.5

Or see this region's nucleotide sequence