Strain Fitness in Pantoea sp. MT58 around IAI47_08800

Experiment: Defined media control, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, anaerobic
1,860,042	-		IAI47_08795	0.41	-0.3
1,860,068	+		IAI47_08795	0.43	-1.0
1,860,069	-		IAI47_08795	0.43	-0.3
1,860,226	-		IAI47_08795	0.55	+1.4
1,860,232	+		IAI47_08795	0.55	+0.2
1,860,233	-		IAI47_08795	0.55	-1.1
1,860,251	+		IAI47_08795	0.56	+0.6
1,860,251	+		IAI47_08795	0.56	+1.8
1,860,251	+		IAI47_08795	0.56	+0.1
1,860,251	+		IAI47_08795	0.56	-0.7
1,860,251	+		IAI47_08795	0.56	-3.4
1,860,252	-		IAI47_08795	0.57	-0.3
1,860,252	-		IAI47_08795	0.57	-1.0
1,860,252	-		IAI47_08795	0.57	+0.0
1,860,252	-		IAI47_08795	0.57	-0.3
1,860,252	-		IAI47_08795	0.57	+0.7
1,860,252	-		IAI47_08795	0.57	-2.3
1,860,252	-		IAI47_08795	0.57	+0.3
1,860,253	+		IAI47_08795	0.57	-0.6
1,860,253	+				+0.0
1,860,253	+		IAI47_08795	0.57	-1.8
1,860,254	-		IAI47_08795	0.57	+1.0
1,860,254	-		IAI47_08795	0.57	+1.3
1,860,254	-		IAI47_08795	0.57	-0.8
1,860,284	-		IAI47_08795	0.59	-1.6
1,860,292	+		IAI47_08795	0.59	+2.3
1,860,292	+		IAI47_08795	0.59	+1.3
1,860,292	+		IAI47_08795	0.59	+1.3
1,860,292	+		IAI47_08795	0.59	+1.0
1,860,293	-		IAI47_08795	0.59	+0.2
1,860,293	-		IAI47_08795	0.59	+1.7
1,860,293	-		IAI47_08795	0.59	-1.8
1,860,293	-		IAI47_08795	0.59	-2.1
1,860,299	+		IAI47_08795	0.60	+0.8
1,860,299	+		IAI47_08795	0.60	+1.7
1,860,299	+		IAI47_08795	0.60	+0.3
1,860,299	+		IAI47_08795	0.60	+1.2
1,860,300	-		IAI47_08795	0.60	-1.6
1,860,300	-		IAI47_08795	0.60	+0.8
1,860,300	-		IAI47_08795	0.60	-1.9
1,860,300	-		IAI47_08795	0.60	+0.3
1,860,300	-		IAI47_08795	0.60	+0.0
1,860,300	-		IAI47_08795	0.60	+0.9
1,860,302	+		IAI47_08795	0.60	-1.8
1,860,302	+		IAI47_08795	0.60	-0.9
1,860,302	+		IAI47_08795	0.60	+0.3
1,860,303	-		IAI47_08795	0.60	+2.5
1,860,303	-		IAI47_08795	0.60	+0.4
1,860,303	-		IAI47_08795	0.60	-1.4
1,860,303	-		IAI47_08795	0.60	+2.8
1,860,303	-		IAI47_08795	0.60	-1.5
1,860,334	-		IAI47_08795	0.62	+0.1
1,860,345	+		IAI47_08795	0.63	-0.3
1,860,346	-		IAI47_08795	0.63	-1.9
1,860,445	+		IAI47_08795	0.71	-1.8
1,860,445	+		IAI47_08795	0.71	+0.2
1,860,445	+		IAI47_08795	0.71	-1.8
1,860,445	+		IAI47_08795	0.71	+0.5
1,860,446	-		IAI47_08795	0.71	+0.6
1,860,446	-		IAI47_08795	0.71	-0.7
1,860,446	-		IAI47_08795	0.71	+1.7
1,860,446	-		IAI47_08795	0.71	-0.5
1,860,471	-		IAI47_08795	0.72	+0.6
1,860,527	-		IAI47_08795	0.76	+0.1
1,860,647	+		IAI47_08795	0.85	+0.3
1,860,821	+				+1.8
1,860,821	+				-0.8
1,860,822	-				+1.1
1,860,823	+				-2.3
1,860,823	+				-0.3
1,860,823	+				-1.3
1,860,823	+				+1.1
1,860,823	+				-1.7
1,860,824	-				-0.1
1,860,824	-				-3.6
1,860,824	-				+1.4
1,860,873	+				-1.8
1,860,873	+				+2.1
1,860,873	+				-0.5
1,860,873	+				-2.3
1,860,874	-				-1.5
1,860,874	-				-0.1
1,860,895	-				+0.7
1,860,895	-				-1.1
1,860,918	+				+1.0
1,860,919	-				-2.9
1,860,919	-				-1.6
1,860,919	-				+1.1
1,860,919	-				-1.7
1,860,934	-				+0.4
1,860,967	+				+0.4
1,860,968	-				+2.0
1,861,018	+		IAI47_08800	0.29	-0.3
1,861,019	-		IAI47_08800	0.29	-0.7
1,861,019	-		IAI47_08800	0.29	-2.8
1,861,019	-		IAI47_08800	0.29	-1.3
1,861,019	-		IAI47_08800	0.29	-1.8
1,861,019	-		IAI47_08800	0.29	+0.5
1,861,109	-		IAI47_08800	0.75	-1.0
1,861,109	-		IAI47_08800	0.75	-1.4
1,861,109	-		IAI47_08800	0.75	-1.0
1,861,154	+				+0.4
1,861,170	+				-0.8
1,861,203	+				-0.3
1,861,203	+				-2.9
1,861,214	+		IAI47_08805	0.13	+1.3
1,861,214	+		IAI47_08805	0.13	-0.9
1,861,215	-		IAI47_08805	0.13	-0.3
1,861,215	-		IAI47_08805	0.13	-2.8
1,861,235	-		IAI47_08805	0.19	+0.3
1,861,235	-		IAI47_08805	0.19	+1.3
1,861,306	+		IAI47_08805	0.40	-0.5
1,861,307	-		IAI47_08805	0.40	+0.3
1,861,307	-		IAI47_08805	0.40	-2.1
1,861,307	-		IAI47_08805	0.40	+0.7
1,861,310	+		IAI47_08805	0.41	-0.2
1,861,311	-		IAI47_08805	0.41	+3.1
1,861,345	+		IAI47_08805	0.51	+1.1
1,861,346	-		IAI47_08805	0.51	+0.5
1,861,346	-		IAI47_08805	0.51	+4.1
1,861,443	+		IAI47_08805	0.79	+0.7
1,861,443	+		IAI47_08805	0.79	+0.7
1,861,444	-		IAI47_08805	0.80	+0.1
1,861,444	-		IAI47_08805	0.80	-0.1
1,861,444	-		IAI47_08805	0.80	+1.7
1,861,444	-		IAI47_08805	0.80	-0.4
1,861,446	+		IAI47_08805	0.80	-1.9
1,861,446	+		IAI47_08805	0.80	+1.1
1,861,446	+		IAI47_08805	0.80	+0.5
1,861,447	-		IAI47_08805	0.81	-1.4
1,861,447	-		IAI47_08805	0.81	+1.4
1,861,447	-		IAI47_08805	0.81	-0.5
1,861,459	+		IAI47_08805	0.84	-1.7
1,861,459	+		IAI47_08805	0.84	+1.6
1,861,460	-		IAI47_08805	0.84	-0.3
1,861,480	+				+0.7
1,861,480	+				+0.3
1,861,480	+				-0.7
1,861,480	+				-1.1
1,861,480	+				-0.0
1,861,480	+				+1.9
1,861,480	+				+1.7
1,861,480	+				+0.0
1,861,480	+				-1.5
1,861,480	+				+0.9
1,861,481	-				+0.7
1,861,481	-				-1.4
1,861,481	-				+0.8
1,861,481	-				+1.6
1,861,481	-				-1.0
1,861,481	-				+2.3
1,861,481	-				+1.5
1,861,481	-				-1.1
1,861,507	+				-0.7
1,861,508	-				+0.6
1,861,508	-				-0.6
1,861,508	-				-1.3
1,861,508	-				+1.2
1,861,508	-				+1.7
1,861,508	-				-2.4
1,861,529	+				+0.8
1,861,529	+				+1.6
1,861,529	+				-0.5
1,861,530	-				-1.7
1,861,540	+				+0.1
1,861,540	+				+0.4
1,861,540	+				-0.5
1,861,541	-				-0.4
1,861,560	-				-0.8
1,861,575	+				+0.4
1,861,575	+				-0.3
1,861,575	+				+1.1
1,861,576	-				+0.5
1,861,576	-				+0.2
1,861,576	-				+1.0
1,861,582	+				-1.3
1,861,698	-		IAI47_08810	0.33	+0.9
1,861,712	+		IAI47_08810	0.36	-0.6
1,861,712	+		IAI47_08810	0.36	+1.2
1,861,712	+		IAI47_08810	0.36	-1.5
1,861,712	+		IAI47_08810	0.36	-0.4
1,861,713	-		IAI47_08810	0.37	-0.5
1,861,713	-		IAI47_08810	0.37	-0.2
1,861,758	-		IAI47_08810	0.49	-0.3
1,861,758	-		IAI47_08810	0.49	-2.2
1,861,758	-		IAI47_08810	0.49	+0.6
1,861,799	+		IAI47_08810	0.61	+1.8
1,861,799	+		IAI47_08810	0.61	-2.1
1,861,799	+		IAI47_08810	0.61	-3.0
1,861,800	-		IAI47_08810	0.61	+1.5
1,861,800	-		IAI47_08810	0.61	+1.1
1,861,800	-		IAI47_08810	0.61	-0.3
1,861,877	+		IAI47_08810	0.82	+1.3
1,861,877	+		IAI47_08810	0.82	-0.8
1,861,877	+		IAI47_08810	0.82	+1.0
1,861,878	-		IAI47_08810	0.82	+0.1
1,861,878	-		IAI47_08810	0.82	-2.4
1,861,905	+				-0.5
1,861,906	-				+1.7
1,861,906	-				+1.5
1,861,933	+				+1.3
1,861,933	+				+1.4
1,861,933	+				+2.0
1,861,934	-				+2.3
1,861,934	-				+0.6
1,861,945	+				+0.0
1,861,945	+				+0.1
1,861,945	+				-1.8
1,861,945	+				+0.3
1,861,945	+				-2.5
1,861,945	+				+0.3
1,861,946	-				-1.0
1,861,946	-				-2.6
1,861,946	-				-0.8
1,861,974	+				+1.9
1,862,009	+				+0.9
1,862,009	+				-2.1
1,862,009	+				-0.8
1,862,010	-				+2.7
1,862,010	-				+0.2
1,862,010	-				-1.1
1,862,033	+				-2.1
1,862,034	-				-0.9
1,862,055	+				-1.1
1,862,056	-				-0.6
1,862,056	-				+0.4
1,862,056	-				-1.6
1,862,056	-				+1.6
1,862,065	+				+0.7
1,862,065	+				-1.5
1,862,065	+				+2.1
1,862,072	+				-1.3
1,862,072	+				+0.0
1,862,073	-				+0.1
1,862,073	-				+0.5
1,862,074	+				+0.7
1,862,075	-				+0.1
1,862,075	-				-1.9
1,862,091	+				+0.5
1,862,118	-				+0.5
1,862,139	+				+1.6