Strain Fitness in Pantoea sp. MT58 around IAI47_06305

Experiment: Defined media control, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, anaerobic
1,280,455	+		IAI47_06295	0.80	+0.5
1,280,456	-		IAI47_06295	0.80	+0.3
1,280,456	-		IAI47_06295	0.80	-1.8
1,280,458	+		IAI47_06295	0.80	+0.1
1,280,458	+		IAI47_06295	0.80	+0.9
1,280,458	+		IAI47_06295	0.80	+1.8
1,280,459	-		IAI47_06295	0.80	+0.2
1,280,471	+		IAI47_06295	0.82	+1.9
1,280,472	-		IAI47_06295	0.82	+0.1
1,280,472	-		IAI47_06295	0.82	-1.4
1,280,508	+		IAI47_06295	0.87	+0.0
1,280,508	+		IAI47_06295	0.87	+1.2
1,280,508	+		IAI47_06295	0.87	+1.8
1,280,508	+		IAI47_06295	0.87	+1.0
1,280,508	+		IAI47_06295	0.87	+1.2
1,280,509	-		IAI47_06295	0.87	+1.4
1,280,509	-		IAI47_06295	0.87	-0.3
1,280,510	+		IAI47_06295	0.87	+0.0
1,280,510	+		IAI47_06295	0.87	+2.1
1,280,510	+		IAI47_06295	0.87	+0.1
1,280,510	+		IAI47_06295	0.87	-2.5
1,280,511	-		IAI47_06295	0.88	-1.2
1,280,511	-		IAI47_06295	0.88	-1.3
1,280,518	+		IAI47_06295	0.89	-1.8
1,280,519	-		IAI47_06295	0.89	+1.4
1,280,519	-		IAI47_06295	0.89	-1.9
1,280,519	-		IAI47_06295	0.89	-2.3
1,280,519	-		IAI47_06295	0.89	+1.0
1,280,519	-		IAI47_06295	0.89	-0.1
1,280,519	-		IAI47_06295	0.89	+0.1
1,280,519	-		IAI47_06295	0.89	-1.0
1,280,525	+		IAI47_06295	0.90	+3.0
1,280,526	-		IAI47_06295	0.90	-1.8
1,280,526	-		IAI47_06295	0.90	+1.0
1,280,526	-		IAI47_06295	0.90	+1.2
1,280,526	-		IAI47_06295	0.90	-0.8
1,280,526	-		IAI47_06295	0.90	+1.0
1,280,526	-		IAI47_06295	0.90	+0.2
1,280,601	+				+1.4
1,280,601	+				+1.8
1,280,602	-				+0.1
1,280,607	+				+0.0
1,280,607	+				-1.2
1,280,607	+				-2.0
1,280,607	+				-2.6
1,280,607	+				-3.3
1,280,607	+				+1.2
1,280,608	-				-0.8
1,280,608	-				+0.5
1,280,608	-				+0.8
1,280,608	-				+0.6
1,280,608	-				+0.1
1,280,608	-				-0.4
1,280,608	-				+1.4
1,280,608	-				-0.1
1,280,608	-				+0.0
1,280,619	+				-1.3
1,280,619	+				-0.9
1,280,619	+				+1.0
1,280,620	-				+1.6
1,280,625	-				+0.6
1,280,625	-				-0.2
1,280,625	-				+0.8
1,280,625	-				-0.6
1,280,643	+				-0.5
1,280,643	+				-1.5
1,280,644	-				-0.1
1,280,644	-				+3.6
1,280,644	-				-1.8
1,280,743	-		IAI47_06300	0.17	+3.1
1,280,750	+		IAI47_06300	0.18	+2.1
1,280,750	+		IAI47_06300	0.18	+1.4
1,280,750	+		IAI47_06300	0.18	+0.3
1,280,751	-		IAI47_06300	0.18	+1.0
1,280,751	-		IAI47_06300	0.18	-1.7
1,280,819	+		IAI47_06300	0.27	-0.0
1,280,819	+		IAI47_06300	0.27	-1.2
1,280,820	-		IAI47_06300	0.27	-2.6
1,280,820	-		IAI47_06300	0.27	+1.0
1,280,820	-		IAI47_06300	0.27	+0.7
1,280,820	-		IAI47_06300	0.27	-1.0
1,280,820	-		IAI47_06300	0.27	+0.7
1,280,844	+		IAI47_06300	0.30	-0.1
1,280,845	-		IAI47_06300	0.31	-1.4
1,280,845	-		IAI47_06300	0.31	+1.6
1,280,845	-		IAI47_06300	0.31	-1.6
1,280,910	+		IAI47_06300	0.39	-2.2
1,280,910	+		IAI47_06300	0.39	-1.4
1,280,911	-		IAI47_06300	0.39	+0.6
1,280,911	-		IAI47_06300	0.39	+0.6
1,280,911	-		IAI47_06300	0.39	+0.1
1,281,011	-		IAI47_06300	0.52	-0.1
1,281,019	-		IAI47_06300	0.53	+2.0
1,281,019	-		IAI47_06300	0.53	+1.8
1,281,213	+		IAI47_06300	0.78	+1.0
1,281,213	+		IAI47_06300	0.78	-0.3
1,281,214	-		IAI47_06300	0.78	-2.6
1,281,351	-				-0.2
1,281,351	-				+0.6
1,281,379	+				+1.8
1,281,379	+				-0.4
1,281,379	+				+0.2
1,281,379	+				-1.4
1,281,380	-				-1.4
1,281,420	-				+1.0
1,281,459	-				-0.9
1,281,459	-				+1.4
1,281,459	-				-0.8
1,281,552	+		IAI47_06305	0.15	-1.6
1,281,552	+		IAI47_06305	0.15	+1.2
1,281,552	+		IAI47_06305	0.15	+2.0
1,281,553	-		IAI47_06305	0.15	+1.4
1,281,570	+		IAI47_06305	0.17	+0.8
1,281,570	+		IAI47_06305	0.17	-0.1
1,281,571	-		IAI47_06305	0.17	+0.9
1,281,571	-		IAI47_06305	0.17	+1.2
1,281,576	+		IAI47_06305	0.18	-1.7
1,281,576	+		IAI47_06305	0.18	+0.9
1,281,576	+		IAI47_06305	0.18	-1.8
1,281,576	+		IAI47_06305	0.18	-3.1
1,281,577	-		IAI47_06305	0.18	+0.4
1,281,577	-		IAI47_06305	0.18	+0.8
1,281,594	+		IAI47_06305	0.20	-0.4
1,281,628	-		IAI47_06305	0.23	+0.7
1,281,628	-		IAI47_06305	0.23	-0.0
1,281,638	+		IAI47_06305	0.24	-1.3
1,281,639	-		IAI47_06305	0.25	-0.4
1,281,694	-		IAI47_06305	0.31	+0.1
1,281,694	-		IAI47_06305	0.31	+1.8
1,281,694	-		IAI47_06305	0.31	-0.1
1,281,694	-		IAI47_06305	0.31	+0.9
1,281,717	+		IAI47_06305	0.33	-0.6
1,281,717	+		IAI47_06305	0.33	+2.5
1,281,717	+		IAI47_06305	0.33	+1.0
1,281,718	-		IAI47_06305	0.33	-0.5
1,281,718	-		IAI47_06305	0.33	+1.6
1,281,734	+		IAI47_06305	0.35	-0.0
1,281,734	+		IAI47_06305	0.35	+1.2
1,281,734	+		IAI47_06305	0.35	+1.5
1,281,734	+		IAI47_06305	0.35	+3.2
1,281,735	-		IAI47_06305	0.35	-0.6
1,281,735	-		IAI47_06305	0.35	+0.0
1,281,735	-		IAI47_06305	0.35	-0.2
1,281,735	-		IAI47_06305	0.35	-2.7
1,281,735	-		IAI47_06305	0.35	+0.1
1,281,735	-		IAI47_06305	0.35	+2.1
1,281,735	-		IAI47_06305	0.35	+0.7
1,281,735	-		IAI47_06305	0.35	+4.3
1,281,741	+		IAI47_06305	0.36	-1.1
1,281,741	+		IAI47_06305	0.36	+0.7
1,281,742	-		IAI47_06305	0.36	-0.1
1,281,742	-		IAI47_06305	0.36	-1.5
1,281,774	+		IAI47_06305	0.40	-0.4
1,281,774	+		IAI47_06305	0.40	+0.7
1,281,774	+		IAI47_06305	0.40	-2.5
1,281,775	-		IAI47_06305	0.40	+1.6
1,281,775	-		IAI47_06305	0.40	-0.1
1,281,775	-		IAI47_06305	0.40	+0.1
1,281,821	-		IAI47_06305	0.45	-0.0
1,281,991	+		IAI47_06305	0.64	-1.1
1,281,991	+		IAI47_06305	0.64	+0.6
1,281,991	+		IAI47_06305	0.64	+0.3
1,281,992	-		IAI47_06305	0.64	+0.9
1,281,994	+		IAI47_06305	0.64	+2.6
1,281,994	+		IAI47_06305	0.64	+0.8
1,281,994	+		IAI47_06305	0.64	+0.3
1,281,995	-		IAI47_06305	0.64	+1.4
1,281,995	-		IAI47_06305	0.64	+3.1
1,282,009	-		IAI47_06305	0.66	-1.8
1,282,046	-		IAI47_06305	0.70	+0.2
1,282,125	+		IAI47_06305	0.79	-2.3
1,282,125	+		IAI47_06305	0.79	-0.3
1,282,126	-		IAI47_06305	0.79	+0.3
1,282,229	-				-1.2
1,282,260	+				-0.7
1,282,260	+				-3.0
1,282,260	+				-0.1
1,282,260	+				+0.2
1,282,260	+				+0.1
1,282,261	-				+0.6
1,282,261	-				+0.2
1,282,261	-				+1.0
1,282,261	-				-2.1
1,282,261	-				+1.2
1,282,261	-				-1.0
1,282,261	-				+0.4
1,282,261	-				+0.5
1,282,261	-				+1.1
1,282,302	+				+1.0
1,282,305	+				-2.9
1,282,305	+				+2.4
1,282,305	+				-1.0
1,282,306	-				-0.6
1,282,306	-				-1.6
1,282,344	-				+3.0
1,282,344	-				-1.2
1,282,344	-				-2.5
1,282,361	+				-1.7
1,282,361	+				+0.3
1,282,361	+				-2.6
1,282,361	+				+0.1
1,282,361	+				+1.1
1,282,361	+				-0.3
1,282,361	+				-1.0
1,282,361	+				+0.1
1,282,362	-				-1.8
1,282,362	-				-0.2
1,282,362	-				+1.1
1,282,362	-				+1.4
1,282,362	-				-0.9
1,282,380	+				+1.4
1,282,380	+				-0.3
1,282,380	+				-0.0
1,282,380	+				-1.8
1,282,380	+				+0.8
1,282,380	+				+0.6
1,282,380	+				+1.0
1,282,380	+				+0.6
1,282,381	-				+0.8
1,282,381	-				+2.2
1,282,381	-				-2.7
1,282,381	-				-0.5
1,282,381	-				+0.6
1,282,382	+				-1.4
1,282,383	-				-1.4
1,282,383	-				+0.6
1,282,506	+				+3.6
1,282,506	+				-0.3
1,282,506	+				-2.3
1,282,507	-				+0.5
1,282,551	+				+0.6
1,282,552	-				-0.3
1,282,552	-				+2.3
1,282,566	+		IAI47_06310	0.10	+1.4
1,282,566	+		IAI47_06310	0.10	+1.0
1,282,566	+		IAI47_06310	0.10	-0.2
1,282,566	+		IAI47_06310	0.10	+0.5
1,282,566	+		IAI47_06310	0.10	-2.2
1,282,566	+		IAI47_06310	0.10	+0.6
1,282,635	+		IAI47_06310	0.21	-0.1
1,282,635	+		IAI47_06310	0.21	-1.5
1,282,635	+		IAI47_06310	0.21	+0.1
1,282,647	+		IAI47_06310	0.23	+0.9
1,282,648	-		IAI47_06310	0.23	+1.3
1,282,648	-		IAI47_06310	0.23	+2.0
1,282,706	-		IAI47_06310	0.32	+1.5
1,282,732	-		IAI47_06310	0.36	-1.7
1,282,774	-		IAI47_06310	0.43	+1.7
1,283,003	+		IAI47_06310	0.78	+0.9
1,283,004	-		IAI47_06310	0.79	+2.2
1,283,035	+		IAI47_06310	0.83	+1.9
1,283,036	-		IAI47_06310	0.83	+0.3
1,283,036	-		IAI47_06310	0.83	-2.4
1,283,036	-		IAI47_06310	0.83	-3.2
1,283,065	+		IAI47_06310	0.88	-1.5
1,283,065	+		IAI47_06310	0.88	-1.0
1,283,073	+		IAI47_06310	0.89	+1.6
1,283,073	+		IAI47_06310	0.89	+0.2
1,283,073	+		IAI47_06310	0.89	-0.6
1,283,073	+		IAI47_06310	0.89	-2.7
1,283,073	+		IAI47_06310	0.89	+0.7
1,283,073	+		IAI47_06310	0.89	-2.9
1,283,073	+		IAI47_06310	0.89	-0.9
1,283,074	-		IAI47_06310	0.89	-0.8
1,283,074	-		IAI47_06310	0.89	+0.1
1,283,074	-		IAI47_06310	0.89	-1.4
1,283,074	-		IAI47_06310	0.89	+0.7
1,283,104	+				+1.1
1,283,105	-				+0.5
1,283,105	-				+0.5
1,283,105	-				+0.3
1,283,139	+				-2.9
1,283,167	+				-0.2
1,283,167	+				+0.1
1,283,168	-				-2.2
1,283,168	-				+0.0
1,283,175	+				-1.1
1,283,175	+				-2.9
1,283,175	+				+0.2
1,283,175	+				+1.1
1,283,175	+				-0.9
1,283,176	-				-1.9
1,283,180	+				-1.7
1,283,180	+				-0.1
1,283,181	-				+0.9
1,283,190	-				-0.2
1,283,195	+				-1.5
1,283,196	-				-0.9
1,283,225	+				+0.9
1,283,226	-				-1.2
1,283,291	+				-2.4