Experiment: Defined media control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04140 and IAI47_04145 are separated by 94 nucleotides IAI47_04145 and IAI47_04150 are separated by 298 nucleotides IAI47_04150 and IAI47_04155 overlap by 1 nucleotides
IAI47_04140: IAI47_04140 - 7-carboxy-7-deazaguanine synthase QueE, at 870,502 to 871,173
_04140
IAI47_04145: IAI47_04145 - 6-carboxytetrahydropterin synthase QueD, at 871,268 to 871,627
_04145
IAI47_04150: IAI47_04150 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 871,926 to 873,731
_04150
IAI47_04155: IAI47_04155 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 873,731 to 875,452
_04155
Position (kb) 871
872
873
874 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.126 kb on - strand at 871.126 kb on - strand at 871.152 kb on + strand at 871.153 kb on - strand at 871.153 kb on - strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.157 kb on - strand at 871.164 kb on + strand at 871.176 kb on - strand at 871.181 kb on + strand at 871.181 kb on + strand at 871.182 kb on - strand at 871.182 kb on - strand at 871.193 kb on - strand at 871.236 kb on - strand at 871.236 kb on - strand at 871.269 kb on + strand at 871.322 kb on + strand, within IAI47_04145 at 871.322 kb on + strand, within IAI47_04145 at 871.323 kb on - strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.413 kb on + strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.416 kb on + strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.432 kb on + strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.445 kb on - strand, within IAI47_04145 at 871.487 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.577 kb on + strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.609 kb on + strand at 871.609 kb on + strand at 871.610 kb on - strand at 871.610 kb on - strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.622 kb on - strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.663 kb on - strand at 871.670 kb on + strand at 871.722 kb on + strand at 871.722 kb on + strand at 871.723 kb on - strand at 871.751 kb on + strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.769 kb on - strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.785 kb on - strand at 871.790 kb on + strand at 871.806 kb on + strand at 871.806 kb on + strand at 871.819 kb on + strand at 871.820 kb on - strand at 871.826 kb on + strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.850 kb on + strand at 871.851 kb on - strand at 871.851 kb on - strand at 871.853 kb on + strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.855 kb on + strand at 871.855 kb on + strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.907 kb on + strand at 871.907 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.985 kb on - strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.038 kb on - strand at 872.054 kb on - strand at 872.054 kb on - strand at 872.069 kb on + strand at 872.088 kb on - strand at 872.088 kb on - strand at 872.117 kb on + strand, within IAI47_04150 at 872.117 kb on + strand, within IAI47_04150 at 872.118 kb on - strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.204 kb on - strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.622 kb on + strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150 at 872.660 kb on - strand, within IAI47_04150 at 872.667 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.903 kb on + strand, within IAI47_04150 at 872.904 kb on - strand, within IAI47_04150 at 872.925 kb on + strand, within IAI47_04150 at 872.926 kb on - strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.973 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 873.003 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.098 kb on + strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.164 kb on + strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.375 kb on - strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.395 kb on + strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.444 kb on + strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.470 kb on + strand, within IAI47_04150 at 873.471 kb on - strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.511 kb on - strand, within IAI47_04150 at 873.514 kb on + strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.602 kb on + strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.686 kb on - strand at 873.686 kb on - strand at 873.726 kb on + strand at 873.726 kb on + strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.730 kb on - strand at 873.730 kb on - strand at 873.739 kb on + strand at 873.774 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.046 kb on - strand, within IAI47_04155 at 874.055 kb on + strand, within IAI47_04155 at 874.056 kb on - strand, within IAI47_04155 at 874.182 kb on + strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.201 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.293 kb on - strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.517 kb on - strand, within IAI47_04155 at 874.529 kb on + strand, within IAI47_04155 at 874.530 kb on - strand, within IAI47_04155 at 874.556 kb on + strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media control, anaerobic remove 870,935 - IAI47_04140 0.64 -1.4 870,935 - IAI47_04140 0.64 -1.2 870,935 - IAI47_04140 0.64 +1.5 871,034 + IAI47_04140 0.79 -1.2 871,034 + IAI47_04140 0.79 +1.6 871,034 + IAI47_04140 0.79 +2.0 871,034 + IAI47_04140 0.79 +0.7 871,034 + IAI47_04140 0.79 +1.9 871,035 - IAI47_04140 0.79 -0.3 871,035 - IAI47_04140 0.79 -0.8 871,044 + IAI47_04140 0.81 +0.1 871,044 + IAI47_04140 0.81 +2.2 871,044 + IAI47_04140 0.81 -0.8 871,044 + IAI47_04140 0.81 +2.0 871,045 - IAI47_04140 0.81 -0.3 871,045 - IAI47_04140 0.81 -0.3 871,064 + IAI47_04140 0.84 -0.4 871,064 + IAI47_04140 0.84 -3.4 871,064 + IAI47_04140 0.84 +0.7 871,064 + IAI47_04140 0.84 -1.1 871,126 - +0.1 871,126 - -0.2 871,152 + -1.4 871,153 - -0.7 871,153 - +0.5 871,156 + -1.2 871,156 + -0.4 871,156 + -1.3 871,156 + +1.2 871,157 - +0.5 871,164 + +0.9 871,176 - -0.7 871,181 + -1.2 871,181 + -0.2 871,182 - +1.1 871,182 - -0.1 871,193 - -0.5 871,236 - +0.0 871,236 - -0.3 871,269 + +0.3 871,322 + IAI47_04145 0.15 -0.8 871,322 + IAI47_04145 0.15 +1.4 871,323 - IAI47_04145 0.15 -1.0 871,402 + IAI47_04145 0.37 -1.8 871,402 + IAI47_04145 0.37 -1.8 871,403 - IAI47_04145 0.38 +0.1 871,403 - IAI47_04145 0.38 +0.0 871,403 - IAI47_04145 0.38 -1.7 871,403 - IAI47_04145 0.38 -0.2 871,403 - IAI47_04145 0.38 +0.6 871,403 - IAI47_04145 0.38 +0.2 871,413 + IAI47_04145 0.40 -1.7 871,414 - IAI47_04145 0.41 -0.0 871,414 - IAI47_04145 0.41 +0.2 871,414 - IAI47_04145 0.41 +0.3 871,414 - IAI47_04145 0.41 +0.2 871,414 - IAI47_04145 0.41 -1.9 871,416 + IAI47_04145 0.41 +1.1 871,417 - IAI47_04145 0.41 +1.2 871,417 - IAI47_04145 0.41 +0.4 871,417 - IAI47_04145 0.41 -1.1 871,432 + IAI47_04145 0.46 -0.7 871,433 - IAI47_04145 0.46 -3.4 871,433 - IAI47_04145 0.46 +0.5 871,434 + IAI47_04145 0.46 +0.2 871,434 + IAI47_04145 0.46 +0.5 871,434 + IAI47_04145 0.46 -0.2 871,434 + IAI47_04145 0.46 +0.9 871,434 + IAI47_04145 0.46 +0.3 871,434 + IAI47_04145 0.46 -1.5 871,435 - IAI47_04145 0.46 +1.7 871,435 - IAI47_04145 0.46 +2.1 871,435 - IAI47_04145 0.46 +2.7 871,445 - IAI47_04145 0.49 -0.0 871,487 - IAI47_04145 0.61 +1.4 871,508 - IAI47_04145 0.67 +0.3 871,508 - IAI47_04145 0.67 +3.4 871,577 + IAI47_04145 0.86 -1.5 871,578 - IAI47_04145 0.86 +2.8 871,578 - IAI47_04145 0.86 -0.3 871,578 - IAI47_04145 0.86 -0.6 871,609 + +0.7 871,609 + -1.7 871,610 - -0.5 871,610 - -0.3 871,621 + -0.0 871,621 + +0.2 871,621 + +0.3 871,621 + +1.5 871,622 - -2.2 871,627 + +1.7 871,627 + +0.6 871,627 + +0.3 871,627 + +1.1 871,627 + +2.2 871,627 + +0.5 871,627 + -2.5 871,627 + -1.3 871,627 + -0.6 871,628 - -1.1 871,628 - +0.3 871,628 - -0.3 871,628 - -0.2 871,628 - -0.1 871,628 - +0.6 871,663 - -2.5 871,670 + -1.3 871,722 + -0.7 871,722 + -0.1 871,723 - +0.2 871,751 + -0.5 871,752 - -0.2 871,752 - -0.0 871,752 - -0.7 871,769 - +0.0 871,784 + +0.7 871,784 + +0.2 871,784 + -0.1 871,785 - -0.6 871,790 + +0.4 871,806 + -2.5 871,806 + -0.3 871,819 + -0.9 871,820 - +0.3 871,826 + -0.4 871,827 - -1.1 871,827 - +0.1 871,827 - +5.2 871,839 + -2.3 871,839 + +1.6 871,839 + -0.2 871,840 - -0.7 871,840 - -0.6 871,840 - 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IAI47_04155 0.54 +0.3 874,656 - IAI47_04155 0.54 -2.6 874,656 - IAI47_04155 0.54 -3.7 874,687 + IAI47_04155 0.56 -3.2 874,687 + IAI47_04155 0.56 -2.1 874,687 + IAI47_04155 0.56 -1.7
Or see this region's nucleotide sequence