Strain Fitness in Pantoea sp. MT58 around IAI47_00860

Experiment: Defined media control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00855 and IAI47_00860 are separated by 152 nucleotidesIAI47_00860 and IAI47_00865 are separated by 164 nucleotides IAI47_00855: IAI47_00855 - cell division protein FtsN, at 179,186 to 180,172 _00855 IAI47_00860: IAI47_00860 - DNA-binding transcriptional regulator CytR, at 180,325 to 181,362 _00860 IAI47_00865: IAI47_00865 - primosomal protein N', at 181,527 to 183,722 _00865 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 179.343 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.511 kb on - strand, within IAI47_00855at 179.511 kb on - strand, within IAI47_00855at 179.785 kb on + strand, within IAI47_00855at 179.785 kb on + strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.888 kb on - strand, within IAI47_00855at 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.185 kb on - strandat 180.185 kb on - strandat 180.185 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.259 kb on - strandat 180.300 kb on + strandat 180.301 kb on - strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.321 kb on - strandat 180.321 kb on - strandat 180.321 kb on - strandat 180.355 kb on - strandat 180.418 kb on + strandat 180.418 kb on + strandat 180.418 kb on + strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.454 kb on + strand, within IAI47_00860at 180.454 kb on + strand, within IAI47_00860at 180.455 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.755 kb on - strand, within IAI47_00860at 180.796 kb on - strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.117 kb on - strand, within IAI47_00860at 181.158 kb on + strand, within IAI47_00860at 181.159 kb on - strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.205 kb on + strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.286 kb on - strandat 181.382 kb on - strandat 181.382 kb on - strandat 181.438 kb on - strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.463 kb on + strandat 181.464 kb on - strandat 181.486 kb on + strandat 181.486 kb on + strandat 181.487 kb on - strandat 181.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined media control, anaerobic
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179,343 - IAI47_00855 0.16 +0.3
179,355 - IAI47_00855 0.17 +1.7
179,355 - IAI47_00855 0.17 +0.6
179,355 - IAI47_00855 0.17 -0.5
179,355 - IAI47_00855 0.17 -0.1
179,510 + IAI47_00855 0.33 +0.3
179,510 + IAI47_00855 0.33 +0.1
179,510 + IAI47_00855 0.33 +0.8
179,511 - IAI47_00855 0.33 -3.4
179,511 - IAI47_00855 0.33 -1.1
179,785 + IAI47_00855 0.61 -0.4
179,785 + IAI47_00855 0.61 +0.7
179,786 - IAI47_00855 0.61 +0.3
179,786 - IAI47_00855 0.61 +0.4
179,786 - IAI47_00855 0.61 +0.3
179,888 - IAI47_00855 0.71 +3.3
180,183 - -2.3
180,183 - -0.6
180,183 - -0.0
180,183 - +0.1
180,183 - -0.8
180,183 - -2.2
180,185 - -0.3
180,185 - -3.5
180,185 - +0.7
180,255 - -0.8
180,255 - +0.8
180,255 - -0.4
180,255 - +1.5
180,255 - +1.0
180,255 - -0.0
180,255 - -1.1
180,259 - -0.5
180,300 + +1.3
180,301 - -0.4
180,320 + +1.0
180,320 + +0.8
180,320 + -0.1
180,320 + +1.1
180,320 + +1.1
180,320 + +0.4
180,320 + -0.3
180,321 - +2.2
180,321 - +1.0
180,321 - +1.1
180,355 - -1.6
180,418 + -1.2
180,418 + -1.0
180,418 + +0.7
180,419 - -0.6
180,419 - -1.1
180,419 - +0.1
180,419 - -0.5
180,454 + IAI47_00860 0.12 +2.4
180,454 + IAI47_00860 0.12 -1.5
180,455 - IAI47_00860 0.13 +3.2
180,509 - IAI47_00860 0.18 -0.5
180,509 - IAI47_00860 0.18 +0.3
180,509 - IAI47_00860 0.18 +1.5
180,509 - IAI47_00860 0.18 -0.6
180,597 + IAI47_00860 0.26 +2.1
180,597 + IAI47_00860 0.26 -1.1
180,597 + IAI47_00860 0.26 -1.8
180,598 - IAI47_00860 0.26 -1.2
180,598 - IAI47_00860 0.26 +1.5
180,598 - IAI47_00860 0.26 +1.7
180,598 - IAI47_00860 0.26 +1.4
180,600 + IAI47_00860 0.26 +1.2
180,600 + IAI47_00860 0.26 +1.9
180,600 + IAI47_00860 0.26 +0.3
180,600 + IAI47_00860 0.26 +0.7
180,600 + IAI47_00860 0.26 +0.4
180,601 - IAI47_00860 0.27 +1.2
180,601 - IAI47_00860 0.27 -0.5
180,601 - IAI47_00860 0.27 -2.2
180,699 + IAI47_00860 0.36 -0.4
180,699 + IAI47_00860 0.36 +1.1
180,699 + IAI47_00860 0.36 +0.8
180,699 + IAI47_00860 0.36 -2.1
180,699 + IAI47_00860 0.36 +1.1
180,699 + IAI47_00860 0.36 +0.4
180,699 + IAI47_00860 0.36 +0.5
180,700 - IAI47_00860 0.36 +0.0
180,700 - IAI47_00860 0.36 +1.8
180,700 - IAI47_00860 0.36 +2.2
180,700 - IAI47_00860 0.36 +1.1
180,700 - IAI47_00860 0.36 +0.6
180,700 - IAI47_00860 0.36 +0.6
180,701 + IAI47_00860 0.36 -0.6
180,701 + IAI47_00860 0.36 -0.1
180,701 + IAI47_00860 0.36 +1.1
180,701 + IAI47_00860 0.36 -2.3
180,701 + IAI47_00860 0.36 +0.0
180,701 + IAI47_00860 0.36 -2.3
180,701 + IAI47_00860 0.36 +1.3
180,701 + IAI47_00860 0.36 -0.7
180,701 + IAI47_00860 0.36 +0.5
180,701 + IAI47_00860 0.36 -0.0
180,701 + IAI47_00860 0.36 +0.5
180,701 + IAI47_00860 0.36 -1.0
180,701 + IAI47_00860 0.36 +1.0
180,701 + IAI47_00860 0.36 +3.7
180,701 + IAI47_00860 0.36 +0.8
180,701 + IAI47_00860 0.36 +0.0
180,701 + IAI47_00860 0.36 +0.5
180,701 + IAI47_00860 0.36 +0.5
180,702 - IAI47_00860 0.36 -0.0
180,702 - IAI47_00860 0.36 +1.5
180,702 - IAI47_00860 0.36 -1.3
180,702 - IAI47_00860 0.36 +0.4
180,702 - IAI47_00860 0.36 +2.3
180,702 - IAI47_00860 0.36 +0.5
180,702 - IAI47_00860 0.36 -0.3
180,702 - IAI47_00860 0.36 +1.2
180,702 - IAI47_00860 0.36 -2.1
180,702 - IAI47_00860 0.36 +0.5
180,702 - IAI47_00860 0.36 +2.0
180,702 - IAI47_00860 0.36 +2.1
180,702 - IAI47_00860 0.36 +2.5
180,702 - IAI47_00860 0.36 +0.0
180,702 - IAI47_00860 0.36 +0.3
180,702 - IAI47_00860 0.36 -1.1
180,702 - IAI47_00860 0.36 -0.2
180,702 - IAI47_00860 0.36 -2.0
180,702 - IAI47_00860 0.36 -0.5
180,702 - IAI47_00860 0.36 -2.2
180,702 - IAI47_00860 0.36 +0.3
180,702 - IAI47_00860 0.36 -2.5
180,702 - IAI47_00860 0.36 +1.3
180,702 - IAI47_00860 0.36 +2.4
180,746 + IAI47_00860 0.41 -0.6
180,746 + IAI47_00860 0.41 +1.5
180,746 + IAI47_00860 0.41 +0.0
180,746 + IAI47_00860 0.41 +0.7
180,746 + IAI47_00860 0.41 -1.1
180,746 + IAI47_00860 0.41 +0.5
180,747 - IAI47_00860 0.41 +0.2
180,747 - IAI47_00860 0.41 -0.1
180,747 - IAI47_00860 0.41 +0.4
180,747 - IAI47_00860 0.41 +1.9
180,747 - IAI47_00860 0.41 +0.8
180,747 - IAI47_00860 0.41 -2.6
180,747 - IAI47_00860 0.41 +0.9
180,747 - IAI47_00860 0.41 +2.1
180,755 - IAI47_00860 0.41 +1.5
180,796 - IAI47_00860 0.45 +0.0
180,810 + IAI47_00860 0.47 +2.4
180,810 + IAI47_00860 0.47 -1.2
180,810 + IAI47_00860 0.47 +0.1
180,811 - IAI47_00860 0.47 +1.6
180,811 - IAI47_00860 0.47 +0.6
180,811 - IAI47_00860 0.47 +2.1
180,811 - IAI47_00860 0.47 +1.7
180,811 - IAI47_00860 0.47 +0.1
180,818 - IAI47_00860 0.47 +0.8
180,818 - IAI47_00860 0.47 -1.6
181,014 + IAI47_00860 0.66 +1.4
181,014 + IAI47_00860 0.66 +2.0
181,070 + IAI47_00860 0.72 +0.4
181,070 + IAI47_00860 0.72 +2.1
181,070 + IAI47_00860 0.72 +1.2
181,070 + IAI47_00860 0.72 -0.6
181,070 + IAI47_00860 0.72 +0.4
181,070 + IAI47_00860 0.72 +1.2
181,071 - IAI47_00860 0.72 +1.1
181,071 - IAI47_00860 0.72 +1.7
181,071 - IAI47_00860 0.72 -0.4
181,117 - IAI47_00860 0.76 +0.2
181,158 + IAI47_00860 0.80 +1.2
181,159 - IAI47_00860 0.80 +0.2
181,170 + IAI47_00860 0.81 -2.1
181,170 + IAI47_00860 0.81 -1.3
181,205 + IAI47_00860 0.85 +0.5
181,237 - IAI47_00860 0.88 +1.2
181,237 - IAI47_00860 0.88 -0.5
181,237 - IAI47_00860 0.88 +0.3
181,286 - +2.2
181,382 - -0.4
181,382 - +1.5
181,438 - +0.3
181,459 + +1.6
181,459 + -1.5
181,459 + +1.5
181,463 + +0.5
181,464 - -2.0
181,486 + +0.6
181,486 + +3.5
181,487 - -1.4
181,487 - +2.6

Or see this region's nucleotide sequence