Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22960 and HSERO_RS22965 are separated by 125 nucleotides HSERO_RS22965 and HSERO_RS22970 are separated by 15 nucleotides HSERO_RS22970 and HSERO_RS22975 are separated by 173 nucleotides
HSERO_RS22960: HSERO_RS22960 - glyoxalase, at 5,268,802 to 5,269,188
_RS22960
HSERO_RS22965: HSERO_RS22965 - activator of HSP90 ATPase, at 5,269,314 to 5,269,769
_RS22965
HSERO_RS22970: HSERO_RS22970 - membrane protein, at 5,269,785 to 5,271,455
_RS22970
HSERO_RS22975: HSERO_RS22975 - chemotaxis protein, at 5,271,629 to 5,273,191
_RS22975
Position (kb) 5269
5270
5271
5272 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5268.791 kb on - strand at 5269.057 kb on + strand, within HSERO_RS22960 at 5269.186 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.330 kb on - strand at 5269.355 kb on - strand at 5269.559 kb on + strand, within HSERO_RS22965 at 5269.780 kb on - strand at 5269.810 kb on + strand at 5269.942 kb on - strand at 5269.969 kb on - strand, within HSERO_RS22970 at 5270.006 kb on - strand, within HSERO_RS22970 at 5270.055 kb on + strand, within HSERO_RS22970 at 5270.314 kb on - strand, within HSERO_RS22970 at 5270.648 kb on + strand, within HSERO_RS22970 at 5270.682 kb on + strand, within HSERO_RS22970 at 5270.703 kb on - strand, within HSERO_RS22970 at 5270.775 kb on + strand, within HSERO_RS22970 at 5270.798 kb on - strand, within HSERO_RS22970 at 5270.905 kb on + strand, within HSERO_RS22970 at 5270.991 kb on - strand, within HSERO_RS22970 at 5271.063 kb on + strand, within HSERO_RS22970 at 5271.087 kb on + strand, within HSERO_RS22970 at 5271.228 kb on - strand, within HSERO_RS22970 at 5271.310 kb on + strand at 5271.341 kb on - strand at 5271.361 kb on + strand at 5271.397 kb on + strand at 5271.425 kb on - strand at 5271.507 kb on + strand at 5271.531 kb on + strand at 5271.546 kb on + strand at 5271.796 kb on + strand, within HSERO_RS22975 at 5271.816 kb on - strand, within HSERO_RS22975 at 5271.902 kb on - strand, within HSERO_RS22975 at 5271.930 kb on + strand, within HSERO_RS22975 at 5271.943 kb on - strand, within HSERO_RS22975 at 5271.980 kb on - strand at 5271.990 kb on - strand, within HSERO_RS22975 at 5272.115 kb on - strand, within HSERO_RS22975 at 5272.137 kb on + strand, within HSERO_RS22975 at 5272.149 kb on + strand, within HSERO_RS22975 at 5272.198 kb on + strand, within HSERO_RS22975 at 5272.294 kb on + strand, within HSERO_RS22975 at 5272.302 kb on - strand, within HSERO_RS22975 at 5272.338 kb on + strand, within HSERO_RS22975 at 5272.401 kb on + strand, within HSERO_RS22975 at 5272.426 kb on - strand, within HSERO_RS22975 at 5272.433 kb on + strand, within HSERO_RS22975
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 5,268,791 - +1.1 5,269,057 + HSERO_RS22960 0.66 +0.4 5,269,186 - +2.4 5,269,319 - -1.8 5,269,319 - -0.6 5,269,319 - +1.5 5,269,330 - +0.1 5,269,355 - +0.3 5,269,559 + HSERO_RS22965 0.54 +0.0 5,269,780 - +0.8 5,269,810 + -0.9 5,269,942 - -0.8 5,269,969 - HSERO_RS22970 0.11 +0.5 5,270,006 - HSERO_RS22970 0.13 -0.5 5,270,055 + HSERO_RS22970 0.16 +1.5 5,270,314 - HSERO_RS22970 0.32 -0.3 5,270,648 + HSERO_RS22970 0.52 -1.0 5,270,682 + HSERO_RS22970 0.54 +0.2 5,270,703 - HSERO_RS22970 0.55 -0.5 5,270,775 + HSERO_RS22970 0.59 -0.7 5,270,798 - HSERO_RS22970 0.61 -0.9 5,270,905 + HSERO_RS22970 0.67 -1.5 5,270,991 - HSERO_RS22970 0.72 -0.7 5,271,063 + HSERO_RS22970 0.76 -0.1 5,271,087 + HSERO_RS22970 0.78 +0.0 5,271,228 - HSERO_RS22970 0.86 -0.3 5,271,310 + -0.9 5,271,341 - -0.2 5,271,361 + -0.4 5,271,397 + -2.4 5,271,425 - -0.1 5,271,507 + -0.7 5,271,531 + +0.1 5,271,546 + +0.6 5,271,796 + HSERO_RS22975 0.11 -0.7 5,271,816 - HSERO_RS22975 0.12 -0.5 5,271,902 - HSERO_RS22975 0.17 +0.1 5,271,930 + HSERO_RS22975 0.19 -0.8 5,271,943 - HSERO_RS22975 0.20 -0.5 5,271,980 - +2.1 5,271,990 - HSERO_RS22975 0.23 -0.5 5,272,115 - HSERO_RS22975 0.31 +0.3 5,272,137 + HSERO_RS22975 0.33 -0.3 5,272,149 + HSERO_RS22975 0.33 +0.3 5,272,198 + HSERO_RS22975 0.36 -1.1 5,272,294 + HSERO_RS22975 0.43 -0.1 5,272,302 - HSERO_RS22975 0.43 -0.6 5,272,338 + HSERO_RS22975 0.45 +0.6 5,272,401 + HSERO_RS22975 0.49 +0.1 5,272,426 - HSERO_RS22975 0.51 +1.2 5,272,433 + HSERO_RS22975 0.51 +0.6
Or see this region's nucleotide sequence