Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22245

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
5,087,080	-		HSERO_RS22240	0.31	+0.7
5,087,080	-		HSERO_RS22240	0.31	+0.6
5,087,103	-		HSERO_RS22240	0.32	-1.1
5,087,303	+		HSERO_RS22240	0.48	-0.0
5,087,336	-		HSERO_RS22240	0.50	+0.4
5,087,427	+		HSERO_RS22240	0.57	+0.8
5,087,525	+		HSERO_RS22240	0.65	-0.2
5,087,563	-		HSERO_RS22240	0.68	-0.2
5,087,698	+		HSERO_RS22240	0.78	+0.7
5,087,853	-				-0.7
5,087,904	+				+0.1
5,088,148	+		HSERO_RS22245	0.11	-0.9
5,088,148	+		HSERO_RS22245	0.11	-1.8
5,088,193	-		HSERO_RS22245	0.16	-0.3
5,088,220	+		HSERO_RS22245	0.19	-0.7
5,088,285	+		HSERO_RS22245	0.26	-0.0
5,088,347	+		HSERO_RS22245	0.33	+0.1
5,088,347	+		HSERO_RS22245	0.33	-0.9
5,088,355	-		HSERO_RS22245	0.34	+0.6
5,088,355	-		HSERO_RS22245	0.34	-1.4
5,088,474	-		HSERO_RS22245	0.46	-1.5
5,088,532	-		HSERO_RS22245	0.53	-0.0
5,088,534	-		HSERO_RS22245	0.53	+0.4
5,088,562	-		HSERO_RS22245	0.56	+0.8
5,088,702	-		HSERO_RS22245	0.71	-0.7
5,088,771	+		HSERO_RS22245	0.78	-0.5
5,088,930	+				+0.2
5,089,248	-				+2.8
5,089,253	-		HSERO_RS22250	0.18	+1.2
5,089,277	+		HSERO_RS22250	0.20	+0.1
5,089,564	-		HSERO_RS22250	0.42	+0.6
5,089,662	-		HSERO_RS22250	0.49	-1.3
5,089,680	-		HSERO_RS22250	0.51	-0.3
5,089,680	-		HSERO_RS22250	0.51	-0.1