Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21945 and HSERO_RS21950 are separated by 21 nucleotides HSERO_RS21950 and HSERO_RS21955 are separated by 11 nucleotides HSERO_RS21955 and HSERO_RS21960 are separated by 221 nucleotides HSERO_RS21960 and HSERO_RS21965 are separated by 293 nucleotides HSERO_RS21965 and HSERO_RS21970 are separated by 69 nucleotides
HSERO_RS21945: HSERO_RS21945 - hypothetical protein, at 5,021,619 to 5,022,050
_RS21945
HSERO_RS21950: HSERO_RS21950 - membrane protein, at 5,022,072 to 5,022,479
_RS21950
HSERO_RS21955: HSERO_RS21955 - hypothetical protein, at 5,022,491 to 5,022,799
_RS21955
HSERO_RS21960: HSERO_RS21960 - glutamine amidotransferase, at 5,023,021 to 5,024,157
_RS21960
HSERO_RS21965: HSERO_RS21965 - NAD(P)H dehydrogenase, at 5,024,451 to 5,024,972
_RS21965
HSERO_RS21970: HSERO_RS21970 - potassium transporter, at 5,025,042 to 5,026,862
_RS21970
Position (kb) 5023
5024
5025 Strain fitness (log2 ratio) -1
0
1 at 5022.045 kb on + strand at 5022.106 kb on + strand at 5022.157 kb on + strand, within HSERO_RS21950 at 5022.169 kb on - strand, within HSERO_RS21950 at 5022.192 kb on - strand, within HSERO_RS21950 at 5022.197 kb on - strand, within HSERO_RS21950 at 5022.203 kb on - strand, within HSERO_RS21950 at 5022.359 kb on + strand, within HSERO_RS21950 at 5022.468 kb on - strand at 5022.510 kb on + strand at 5022.526 kb on + strand, within HSERO_RS21955 at 5022.534 kb on - strand, within HSERO_RS21955 at 5022.664 kb on + strand, within HSERO_RS21955 at 5022.730 kb on + strand, within HSERO_RS21955 at 5022.741 kb on + strand, within HSERO_RS21955 at 5022.749 kb on - strand, within HSERO_RS21955 at 5022.776 kb on + strand at 5022.784 kb on - strand at 5022.845 kb on + strand at 5022.900 kb on + strand at 5022.902 kb on + strand at 5022.943 kb on + strand at 5023.091 kb on - strand at 5023.143 kb on + strand, within HSERO_RS21960 at 5023.470 kb on + strand, within HSERO_RS21960 at 5023.621 kb on - strand, within HSERO_RS21960 at 5023.802 kb on - strand, within HSERO_RS21960 at 5023.934 kb on + strand, within HSERO_RS21960 at 5024.093 kb on + strand at 5024.375 kb on + strand at 5024.398 kb on - strand at 5024.402 kb on - strand at 5024.476 kb on - strand at 5024.534 kb on + strand, within HSERO_RS21965 at 5024.551 kb on + strand, within HSERO_RS21965 at 5024.731 kb on + strand, within HSERO_RS21965 at 5024.864 kb on + strand, within HSERO_RS21965 at 5024.878 kb on + strand, within HSERO_RS21965
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 5,022,045 + -0.9 5,022,106 + -0.6 5,022,157 + HSERO_RS21950 0.21 -0.1 5,022,169 - HSERO_RS21950 0.24 -1.0 5,022,192 - HSERO_RS21950 0.29 -0.2 5,022,197 - HSERO_RS21950 0.31 -0.7 5,022,203 - HSERO_RS21950 0.32 +0.2 5,022,359 + HSERO_RS21950 0.70 -1.2 5,022,468 - +0.4 5,022,510 + +0.0 5,022,526 + HSERO_RS21955 0.11 -0.4 5,022,534 - HSERO_RS21955 0.14 +0.4 5,022,664 + HSERO_RS21955 0.56 +0.5 5,022,730 + HSERO_RS21955 0.77 -0.9 5,022,741 + HSERO_RS21955 0.81 -0.8 5,022,749 - HSERO_RS21955 0.83 -0.8 5,022,776 + +0.0 5,022,784 - -0.3 5,022,845 + -0.3 5,022,900 + -0.2 5,022,902 + +0.7 5,022,943 + -0.3 5,023,091 - +0.5 5,023,143 + HSERO_RS21960 0.11 -0.5 5,023,470 + HSERO_RS21960 0.39 -1.7 5,023,621 - HSERO_RS21960 0.53 -1.1 5,023,802 - HSERO_RS21960 0.69 -0.4 5,023,934 + HSERO_RS21960 0.80 -0.5 5,024,093 + -0.5 5,024,375 + +0.7 5,024,398 - -0.4 5,024,402 - -0.5 5,024,476 - +1.4 5,024,534 + HSERO_RS21965 0.16 +0.6 5,024,551 + HSERO_RS21965 0.19 -1.1 5,024,731 + HSERO_RS21965 0.54 +0.4 5,024,864 + HSERO_RS21965 0.79 +0.1 5,024,878 + HSERO_RS21965 0.82 +0.0
Or see this region's nucleotide sequence