Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17260

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
3,951,990	-		HSERO_RS17255	0.44	-1.1
3,952,096	+		HSERO_RS17255	0.52	-2.8
3,952,416	-		HSERO_RS17255	0.74	-1.0
3,952,570	-		HSERO_RS17255	0.85	-1.7
3,952,594	-		HSERO_RS17255	0.86	-1.3
3,952,624	+		HSERO_RS17255	0.88	-1.4
3,952,632	-		HSERO_RS17255	0.89	-1.7
3,952,715	-				-2.1
3,952,787	+				-1.4
3,952,812	-				-0.2
3,952,834	+				-1.5
3,952,842	+				-2.0
3,952,985	+				-1.6
3,953,073	-		HSERO_RS17260	0.10	-2.7
3,953,201	-		HSERO_RS17260	0.21	-1.7
3,953,226	-		HSERO_RS17260	0.23	-0.4
3,953,260	+		HSERO_RS17260	0.26	-1.7
3,953,370	-		HSERO_RS17260	0.35	-2.0
3,953,767	+		HSERO_RS17260	0.68	-1.1
3,953,876	+		HSERO_RS17260	0.78	-2.5
3,954,022	+		HSERO_RS17260	0.90	-2.7
3,954,261	-				-0.5
3,954,265	+				-1.6
3,954,333	-				-0.0
3,954,358	-				+0.2
3,954,358	-				+1.8
3,954,417	+				-0.7
3,954,598	-		HSERO_RS17265	0.12	+0.3
3,954,608	-		HSERO_RS17265	0.13	+0.1
3,954,679	+		HSERO_RS17265	0.16	-1.2
3,954,911	-		HSERO_RS17265	0.24	-0.8