Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16785

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
3,841,631	+		HSERO_RS16775	0.59	-0.9
3,841,830	+		HSERO_RS16775	0.86	-0.0
3,841,831	+		HSERO_RS16775	0.86	-0.1
3,841,968	+				+0.1
3,842,138	+				-2.3
3,842,159	+		HSERO_RS16780	0.12	+0.1
3,842,228	+		HSERO_RS16780	0.28	-0.3
3,842,238	-		HSERO_RS16780	0.30	-0.1
3,842,238	-		HSERO_RS16780	0.30	-0.1
3,842,314	-		HSERO_RS16780	0.47	+0.3
3,842,369	+		HSERO_RS16780	0.60	-0.8
3,842,377	-		HSERO_RS16780	0.62	-0.7
3,842,556	-				+0.7
3,842,717	+		HSERO_RS16785	0.15	-1.3
3,842,770	+		HSERO_RS16785	0.21	-0.7
3,842,843	+		HSERO_RS16785	0.28	-1.2
3,842,872	-		HSERO_RS16785	0.31	-2.1
3,842,889	-		HSERO_RS16785	0.32	-0.0
3,842,899	+		HSERO_RS16785	0.33	-0.6
3,842,918	+		HSERO_RS16785	0.35	-1.1
3,843,040	-		HSERO_RS16785	0.47	-1.1
3,843,372	+				+0.7
3,843,482	+				-0.4
3,843,539	-				-0.9
3,843,714	-		HSERO_RS16790	0.19	-0.2
3,843,768	+		HSERO_RS16790	0.27	-0.1
3,843,818	-		HSERO_RS16790	0.35	-0.5
3,843,881	+		HSERO_RS16790	0.45	-0.4
3,844,160	+		HSERO_RS16790	0.88	-0.9
3,844,332	+				+0.3
3,844,334	+				+0.7
3,844,347	+				+0.2
3,844,411	-				+0.8