Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15975

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
3,648,379	-				+0.2
3,648,536	+				-0.1
3,648,757	+				-0.7
3,648,808	+				-0.8
3,648,909	+				+1.2
3,648,909	+				-0.1
3,648,914	+				+1.7
3,648,919	-				+0.2
3,649,159	-				-0.0
3,649,277	+		HSERO_RS15975	0.13	-0.3
3,649,467	-		HSERO_RS15975	0.26	-0.7
3,649,586	-		HSERO_RS15975	0.34	-0.2
3,649,634	-		HSERO_RS15975	0.37	-1.0
3,649,697	-		HSERO_RS15975	0.42	+1.2
3,649,878	-		HSERO_RS15975	0.54	+0.5
3,650,041	+		HSERO_RS15975	0.65	+1.2
3,650,228	+		HSERO_RS15975	0.78	-0.3
3,650,228	+		HSERO_RS15975	0.78	-0.4
3,650,236	-		HSERO_RS15975	0.78	-0.1
3,650,474	+				+0.1
3,650,565	+				+0.9
3,650,568	+				+0.3
3,650,644	+				+0.2
3,650,654	+				-0.1
3,650,760	-		HSERO_RS15980	0.13	-0.3
3,650,833	-		HSERO_RS15980	0.18	-1.2
3,650,929	-		HSERO_RS15980	0.24	+0.2
3,650,966	-		HSERO_RS15980	0.26	+0.6
3,651,227	-		HSERO_RS15980	0.43	+0.2
3,651,237	-		HSERO_RS15980	0.43	+0.1
3,651,333	-		HSERO_RS15980	0.50	+0.4
3,651,554	-		HSERO_RS15980	0.64	+0.4