Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15880

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
3,624,421	-				+0.0
3,624,575	-		HSERO_RS15875	0.14	-1.2
3,624,830	+		HSERO_RS15875	0.42	-0.7
3,624,898	+		HSERO_RS15875	0.50	-1.1
3,624,942	-		HSERO_RS15875	0.55	-1.6
3,625,131	+		HSERO_RS15875	0.76	+0.2
3,625,185	-		HSERO_RS15875	0.82	-0.1
3,625,248	-		HSERO_RS15875	0.89	+1.0
3,625,378	-				-0.4
3,625,378	-				+0.5
3,625,431	+		HSERO_RS15880	0.11	+0.6
3,625,489	+		HSERO_RS15880	0.18	-0.6
3,625,537	+		HSERO_RS15880	0.24	-0.3
3,625,545	-		HSERO_RS15880	0.25	+0.1
3,625,583	-		HSERO_RS15880	0.29	-0.5
3,625,601	+		HSERO_RS15880	0.31	-1.5
3,625,679	-		HSERO_RS15880	0.40	-0.1
3,625,742	-		HSERO_RS15880	0.48	+0.2
3,625,770	-		HSERO_RS15880	0.51	-0.3
3,625,770	-		HSERO_RS15880	0.51	-0.8
3,625,890	-		HSERO_RS15880	0.65	-0.3
3,626,035	+		HSERO_RS15880	0.83	+3.8
3,626,035	+		HSERO_RS15880	0.83	-1.0
3,626,043	-		HSERO_RS15880	0.84	-1.8
3,626,118	+				-0.2
3,626,126	-				-0.3
3,626,275	-				-0.2
3,626,348	-				-0.1
3,626,648	-				+2.6
3,626,714	+		HSERO_RS15885	0.25	-0.0
3,626,819	-		HSERO_RS15885	0.43	-1.0
3,626,871	-		HSERO_RS15885	0.52	-0.4
3,626,871	-		HSERO_RS15885	0.52	-0.1
3,626,987	+		HSERO_RS15885	0.72	-1.7
3,627,043	-		HSERO_RS15885	0.82	-0.1
3,627,048	-		HSERO_RS15885	0.83	+0.2
3,627,048	-		HSERO_RS15885	0.83	+0.9
3,627,120	-				+0.1