Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14800

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14795 and HSERO_RS14800 are separated by 138 nucleotidesHSERO_RS14800 and HSERO_RS14805 are separated by 15 nucleotides HSERO_RS14795: HSERO_RS14795 - histidyl-tRNA synthetase, at 3,358,687 to 3,360,042 _RS14795 HSERO_RS14800: HSERO_RS14800 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,360,181 to 3,361,443 _RS14800 HSERO_RS14805: HSERO_RS14805 - membrane protein, at 3,361,459 to 3,362,541 _RS14805 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -1 0 1at 3360.110 kb on - strandat 3360.199 kb on + strandat 3361.612 kb on - strand, within HSERO_RS14805

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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3,360,110 - -0.8
3,360,199 + -1.4
3,361,612 - HSERO_RS14805 0.14 -1.5

Or see this region's nucleotide sequence