Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14795

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14785 and HSERO_RS14790 are separated by 132 nucleotidesHSERO_RS14790 and HSERO_RS14795 are separated by 44 nucleotidesHSERO_RS14795 and HSERO_RS14800 are separated by 138 nucleotides HSERO_RS14785: HSERO_RS14785 - serine/threonine protein kinase, at 3,356,666 to 3,357,865 _RS14785 HSERO_RS14790: HSERO_RS14790 - membrane protein, at 3,357,998 to 3,358,642 _RS14790 HSERO_RS14795: HSERO_RS14795 - histidyl-tRNA synthetase, at 3,358,687 to 3,360,042 _RS14795 HSERO_RS14800: HSERO_RS14800 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,360,181 to 3,361,443 _RS14800 Position (kb) 3358 3359 3360 3361Strain fitness (log2 ratio) -1 0 1at 3358.098 kb on - strand, within HSERO_RS14790at 3358.531 kb on - strand, within HSERO_RS14790at 3358.684 kb on + strandat 3358.685 kb on + strandat 3360.110 kb on - strandat 3360.199 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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3,358,098 - HSERO_RS14790 0.16 -0.5
3,358,531 - HSERO_RS14790 0.83 -1.3
3,358,684 + -1.2
3,358,685 + -1.0
3,360,110 - -0.8
3,360,199 + -1.4

Or see this region's nucleotide sequence