Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12415

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
2,818,842	-		HSERO_RS12410	0.29	+0.4
2,818,861	+		HSERO_RS12410	0.31	-0.1
2,818,884	+		HSERO_RS12410	0.33	+0.2
2,818,905	+		HSERO_RS12410	0.34	-1.3
2,818,905	+				+1.1
2,818,913	-		HSERO_RS12410	0.35	+0.6
2,818,935	+		HSERO_RS12410	0.37	-0.4
2,819,124	+		HSERO_RS12410	0.53	+0.2
2,819,157	+		HSERO_RS12410	0.55	-0.7
2,819,234	-		HSERO_RS12410	0.62	-0.1
2,819,647	+				+0.2
2,819,661	-				-0.2
2,819,947	+				-0.5
2,819,955	-				-0.2
2,820,071	-		HSERO_RS12415	0.12	+0.6
2,820,399	+		HSERO_RS12415	0.22	-0.4
2,820,407	-				+1.0
2,820,427	+		HSERO_RS12415	0.23	-0.3
2,820,872	+		HSERO_RS12415	0.37	-1.2
2,820,880	-		HSERO_RS12415	0.38	+0.3
2,820,880	-		HSERO_RS12415	0.38	+0.6
2,820,906	+		HSERO_RS12415	0.38	-1.2
2,821,177	+		HSERO_RS12415	0.47	-0.1
2,821,183	-		HSERO_RS12415	0.47	-0.1
2,821,286	+		HSERO_RS12415	0.50	+0.3
2,821,286	+		HSERO_RS12415	0.50	-0.1
2,821,319	-		HSERO_RS12415	0.51	-0.2
2,821,406	-		HSERO_RS12415	0.54	+0.7
2,821,514	+		HSERO_RS12415	0.58	-0.7
2,821,527	-		HSERO_RS12415	0.58	-0.1
2,821,550	-		HSERO_RS12415	0.59	-0.7
2,821,550	-		HSERO_RS12415	0.59	-2.1
2,821,636	-		HSERO_RS12415	0.62	-0.5
2,821,706	+		HSERO_RS12415	0.64	+1.1
2,822,007	-		HSERO_RS12415	0.73	-0.5
2,822,065	-		HSERO_RS12415	0.75	+0.3
2,822,297	+		HSERO_RS12415	0.82	+0.8
2,822,389	+		HSERO_RS12415	0.85	+1.2
2,822,389	+		HSERO_RS12415	0.85	+0.8
2,822,392	-		HSERO_RS12415	0.85	+0.7
2,822,674	-				-0.5
2,822,859	+				+0.5
2,822,912	+				+0.4
2,823,079	-		HSERO_RS12420	0.20	-0.1
2,823,200	+				+3.1
2,823,240	-		HSERO_RS12420	0.43	+0.5
2,823,765	+				-0.7