Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11725

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
2,649,256	+		HSERO_RS11715	0.66	+0.2
2,649,375	+		HSERO_RS11715	0.82	+1.1
2,649,423	+		HSERO_RS11715	0.88	+0.3
2,649,496	+				+1.2
2,649,820	+		HSERO_RS11720	0.43	-0.5
2,649,857	+		HSERO_RS11720	0.49	-0.3
2,649,865	-		HSERO_RS11720	0.50	+0.1
2,649,867	+		HSERO_RS11720	0.50	+0.2
2,649,907	-		HSERO_RS11720	0.56	-1.2
2,649,933	+		HSERO_RS11720	0.60	-0.4
2,650,055	-		HSERO_RS11720	0.79	-0.9
2,650,131	-				-0.2
2,650,271	-				+0.4
2,650,286	+				-1.1
2,650,321	+				-1.4
2,650,321	+				-0.2
2,650,388	+		HSERO_RS11725	0.17	-0.1
2,650,577	+		HSERO_RS11725	0.35	-0.0
2,650,578	+		HSERO_RS11725	0.36	-0.4
2,650,585	-		HSERO_RS11725	0.36	-0.2
2,650,585	-		HSERO_RS11725	0.36	-0.1
2,650,770	+		HSERO_RS11725	0.55	-0.1
2,650,910	+		HSERO_RS11725	0.69	-0.8
2,650,942	+		HSERO_RS11725	0.72	+0.0
2,651,425	-				-0.3
2,651,534	+				-0.6
2,651,556	-				+0.5
2,651,760	+				-0.8
2,651,760	+				+0.2
2,651,915	+				-0.2
2,652,033	+				-0.3
2,652,208	-				+0.4