Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09265

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
2,104,805	-		HSERO_RS09255	0.68	-0.1
2,104,966	+				+0.4
2,105,047	+				+0.5
2,105,158	-		HSERO_RS09260	0.26	-0.5
2,105,169	-		HSERO_RS09260	0.28	-0.2
2,105,254	-		HSERO_RS09260	0.42	-0.3
2,105,511	-		HSERO_RS09260	0.85	-0.8
2,105,521	+		HSERO_RS09260	0.86	-2.1
2,105,704	+				-0.8
2,105,712	-				-0.6
2,105,836	-		HSERO_RS09265	0.12	-0.1
2,105,852	+		HSERO_RS09265	0.13	+0.5
2,105,854	-		HSERO_RS09265	0.13	-0.3
2,105,964	+		HSERO_RS09265	0.21	-0.2
2,106,454	-		HSERO_RS09265	0.57	+0.6
2,106,522	-		HSERO_RS09265	0.62	-1.4
2,106,552	-		HSERO_RS09265	0.64	-1.6
2,106,591	-		HSERO_RS09265	0.67	+0.5
2,106,648	+		HSERO_RS09265	0.71	+0.7
2,107,044	+				-0.8
2,107,179	-		HSERO_RS09270	0.11	+0.5
2,107,378	+		HSERO_RS09270	0.52	+1.2
2,107,478	+		HSERO_RS09270	0.72	+1.0
2,107,479	-		HSERO_RS09270	0.73	-0.1
2,107,626	+				-1.0
2,107,636	+				-0.2
2,107,636	+				+0.1
2,107,707	+				+0.8
2,107,725	+				+1.2
2,107,808	+				+0.7