Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08240

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,877,270	+				-1.2
1,877,278	-				+0.0
1,877,364	-		HSERO_RS08235	0.19	+0.5
1,877,385	-		HSERO_RS08235	0.21	+0.0
1,877,636	-		HSERO_RS08235	0.49	-0.0
1,877,724	+		HSERO_RS08235	0.59	+0.5
1,877,829	-		HSERO_RS08235	0.70	-0.1
1,877,829	-		HSERO_RS08235	0.70	-0.4
1,877,842	+		HSERO_RS08235	0.72	-0.2
1,877,850	+		HSERO_RS08235	0.73	+0.1
1,877,858	-		HSERO_RS08235	0.74	-0.6
1,878,020	-				+0.1
1,878,030	-				-1.5
1,878,083	-				+0.6
1,878,096	-				+0.3
1,878,133	-				+0.1
1,878,144	+				-1.8
1,878,157	+				-1.0
1,878,366	-		HSERO_RS08240	0.24	+0.8
1,878,390	+		HSERO_RS08240	0.26	-0.3
1,878,390	+		HSERO_RS08240	0.26	-0.4
1,878,390	+		HSERO_RS08240	0.26	-0.6
1,878,590	+		HSERO_RS08240	0.45	-0.4
1,878,606	+		HSERO_RS08240	0.46	+0.1
1,878,809	+		HSERO_RS08240	0.65	+0.1
1,878,827	-		HSERO_RS08240	0.67	+0.1
1,878,958	-		HSERO_RS08240	0.79	+0.2
1,879,035	-		HSERO_RS08240	0.86	+1.1
1,879,119	+				-1.0
1,879,213	+				-3.0
1,879,444	+		HSERO_RS08245	0.28	-2.0
1,879,504	-		HSERO_RS08245	0.35	+0.6
1,879,513	+		HSERO_RS08245	0.36	-0.4
1,879,599	+		HSERO_RS08245	0.45	+0.0
1,879,726	-		HSERO_RS08245	0.58	+0.0
1,879,774	-		HSERO_RS08245	0.63	-1.0
1,879,887	+		HSERO_RS08245	0.76	-0.4
1,879,930	+		HSERO_RS08245	0.80	+0.9
1,880,011	+		HSERO_RS08245	0.89	-0.2
1,880,054	+				-1.7
1,880,062	-				-1.2
1,880,105	-				-0.8