Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08045

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,838,860	-		HSERO_RS08040	0.13	-0.2
1,838,908	-		HSERO_RS08040	0.19	+0.8
1,838,926	-		HSERO_RS08040	0.21	+0.1
1,838,926	-		HSERO_RS08040	0.21	-0.1
1,839,435	+		HSERO_RS08040	0.81	+0.1
1,839,449	-		HSERO_RS08040	0.83	-0.0
1,839,449	-		HSERO_RS08040	0.83	+0.9
1,839,496	+		HSERO_RS08040	0.88	+0.5
1,839,529	-				+0.1
1,840,087	+		HSERO_RS08045	0.12	-2.2
1,840,109	+		HSERO_RS08045	0.13	-1.1
1,840,421	-		HSERO_RS08045	0.27	-4.0
1,840,455	+				+0.6
1,840,611	-		HSERO_RS08045	0.35	-1.8
1,840,630	-		HSERO_RS08045	0.36	-1.0
1,840,820	+		HSERO_RS08045	0.44	-0.8
1,840,916	-		HSERO_RS08045	0.49	-1.6
1,841,022	-		HSERO_RS08045	0.53	-1.6
1,841,023	+		HSERO_RS08045	0.54	-1.8
1,841,066	-		HSERO_RS08045	0.55	-1.7
1,841,174	+		HSERO_RS08045	0.60	-2.8
1,841,302	+		HSERO_RS08045	0.66	-2.5
1,841,384	+		HSERO_RS08045	0.70	-0.4
1,841,517	-		HSERO_RS08045	0.76	-1.8
1,841,661	-		HSERO_RS08045	0.82	-3.2
1,841,982	-				-0.2
1,842,224	+				+0.8
1,842,274	+				+0.1
1,842,702	+		HSERO_RS08050	0.85	-1.0
1,842,898	-		HSERO_RS08055	0.38	-1.5
1,842,960	+		HSERO_RS08055	0.55	-0.2
1,843,036	-		HSERO_RS08055	0.77	-1.0