Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07660

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,749,260	+		HSERO_RS07655	0.75	-1.0
1,749,288	+		HSERO_RS07655	0.76	-1.8
1,749,300	-		HSERO_RS07655	0.76	-0.4
1,749,331	+		HSERO_RS07655	0.77	+0.6
1,749,380	+		HSERO_RS07655	0.79	-0.8
1,749,478	+		HSERO_RS07655	0.82	-0.9
1,749,892	+				+0.5
1,749,892	+				+0.1
1,749,962	+				+0.1
1,749,970	-				-1.4
1,749,970	-				-1.2
1,749,970	-				-1.4
1,749,970	-				+0.2
1,749,970	-				-0.6
1,749,983	+				+0.7
1,749,991	-				-0.4
1,750,140	+				-0.5
1,750,228	-				-0.1
1,750,494	-		HSERO_RS07660	0.27	+0.0
1,750,591	+		HSERO_RS07660	0.33	-1.4
1,750,606	-		HSERO_RS07660	0.34	-0.6
1,750,787	-		HSERO_RS07660	0.46	+0.4
1,751,041	+		HSERO_RS07660	0.63	-0.1
1,751,072	-		HSERO_RS07660	0.65	+0.3
1,751,246	-		HSERO_RS07660	0.76	+0.6
1,751,329	-		HSERO_RS07660	0.82	-0.5
1,751,385	-		HSERO_RS07660	0.85	+0.2
1,751,431	-		HSERO_RS07660	0.88	-0.6
1,751,854	-				-0.2
1,751,923	-		HSERO_RS07665	0.14	+1.5
1,752,045	+		HSERO_RS07665	0.20	-0.1
1,752,077	-		HSERO_RS07665	0.22	-0.4
1,752,116	-		HSERO_RS07665	0.24	+1.0
1,752,159	+		HSERO_RS07665	0.26	-0.3
1,752,266	+		HSERO_RS07665	0.32	-0.5
1,752,315	+				+2.5
1,752,408	+		HSERO_RS07665	0.40	-0.3
1,752,442	-		HSERO_RS07665	0.42	-0.4
1,752,530	-		HSERO_RS07665	0.46	-0.8