Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06820

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,548,867	+		HSERO_RS06815	0.70	-2.0
1,548,929	-		HSERO_RS06815	0.72	+0.3
1,548,980	-		HSERO_RS06815	0.74	-1.3
1,549,004	-		HSERO_RS06815	0.75	+1.5
1,549,102	+		HSERO_RS06815	0.78	-1.4
1,549,218	-		HSERO_RS06815	0.81	+0.8
1,549,284	-		HSERO_RS06815	0.83	+0.4
1,549,457	+		HSERO_RS06815	0.89	-0.0
1,549,571	+				-1.2
1,549,590	+				-0.3
1,549,616	+				-0.6
1,549,831	+				-0.4
1,549,882	+				-0.7
1,550,026	+		HSERO_RS06820	0.12	-0.3
1,550,062	+		HSERO_RS06820	0.15	-0.3
1,550,062	+		HSERO_RS06820	0.15	+0.0
1,550,062	+		HSERO_RS06820	0.15	-0.0
1,550,065	-		HSERO_RS06820	0.15	-0.7
1,550,173	+		HSERO_RS06820	0.22	-0.0
1,550,181	-		HSERO_RS06820	0.23	-0.6
1,550,208	+		HSERO_RS06820	0.25	+0.5
1,550,216	-		HSERO_RS06820	0.25	+0.4
1,550,216	-		HSERO_RS06820	0.25	+0.9
1,550,230	+		HSERO_RS06820	0.26	+0.0
1,550,292	-		HSERO_RS06820	0.31	+2.2
1,550,423	-		HSERO_RS06820	0.40	-1.7
1,550,516	-		HSERO_RS06820	0.46	-0.5
1,550,541	-		HSERO_RS06820	0.48	-0.1
1,550,546	+		HSERO_RS06820	0.48	+1.1
1,550,554	-		HSERO_RS06820	0.49	-0.6
1,550,554	-		HSERO_RS06820	0.49	+0.3
1,550,638	-		HSERO_RS06820	0.54	+3.6
1,550,688	-		HSERO_RS06820	0.58	-0.7
1,550,732	-		HSERO_RS06820	0.61	-0.2
1,550,794	+				-0.2
1,551,030	+		HSERO_RS06820	0.81	-0.2
1,551,050	+		HSERO_RS06820	0.83	-0.1
1,551,165	-				-1.1
1,551,322	-				-1.7
1,551,329	+				-0.3
1,551,425	+		HSERO_RS06825	0.20	+1.3
1,551,428	+		HSERO_RS06825	0.20	+0.5
1,551,568	-		HSERO_RS06825	0.43	-0.4
1,551,568	-		HSERO_RS06825	0.43	-1.2
1,551,578	+		HSERO_RS06825	0.45	+0.5
1,551,838	-		HSERO_RS06825	0.87	-0.0
1,551,924	+				+0.3
1,552,252	+				-0.1
1,552,252	+				+1.4
1,552,276	-				-0.2