Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06810

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,544,463	+				+2.8
1,544,562	-				-1.4
1,544,598	+				-2.3
1,544,602	-				+0.9
1,544,669	-				+2.2
1,544,673	+				+0.3
1,544,673	+				-1.1
1,544,731	+				+0.5
1,544,785	+		HSERO_RS06805	0.17	-0.3
1,545,153	+		HSERO_RS06805	0.77	-1.5
1,545,161	-		HSERO_RS06805	0.79	+1.2
1,545,219	-		HSERO_RS06805	0.88	-1.3
1,545,339	+				+0.1
1,545,468	-				+1.1
1,545,695	-		HSERO_RS06810	0.22	-0.3
1,545,701	+		HSERO_RS06810	0.22	+0.1
1,545,704	-		HSERO_RS06810	0.22	-0.1
1,545,756	-				-1.2
1,545,764	-				+2.8
1,545,774	+		HSERO_RS06810	0.28	+0.1
1,545,777	-		HSERO_RS06810	0.28	-1.2
1,545,779	+		HSERO_RS06810	0.29	-0.3
1,545,936	-		HSERO_RS06810	0.42	+0.3
1,546,050	-		HSERO_RS06810	0.51	-0.1
1,546,050	-		HSERO_RS06810	0.51	+0.3
1,546,052	+		HSERO_RS06810	0.51	+0.4
1,546,076	+		HSERO_RS06810	0.53	+1.3
1,546,092	+		HSERO_RS06810	0.55	-0.6
1,546,100	-		HSERO_RS06810	0.55	+0.1
1,546,180	-		HSERO_RS06810	0.62	-0.4
1,546,206	+		HSERO_RS06810	0.64	-1.5
1,546,206	+		HSERO_RS06810	0.64	+0.4
1,546,432	+		HSERO_RS06810	0.83	+0.8
1,546,433	-		HSERO_RS06810	0.83	+0.2
1,546,465	+		HSERO_RS06810	0.86	-1.7
1,546,554	+				-0.6
1,546,554	+				-0.3
1,546,584	-				-2.3
1,546,602	-				-1.3
1,546,607	-				+0.2
1,546,889	+				+0.8
1,547,016	-		HSERO_RS06815	0.11	-0.6
1,547,051	+		HSERO_RS06815	0.13	-0.3
1,547,077	-		HSERO_RS06815	0.13	-0.4
1,547,106	+		HSERO_RS06815	0.14	+0.2
1,547,209	+		HSERO_RS06815	0.18	+1.1
1,547,219	+		HSERO_RS06815	0.18	+0.4
1,547,253	+		HSERO_RS06815	0.19	-0.3
1,547,344	-		HSERO_RS06815	0.22	-0.4
1,547,426	+		HSERO_RS06815	0.24	+0.1
1,547,431	+		HSERO_RS06815	0.25	-0.0