Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06455 and HSERO_RS06460 are separated by 218 nucleotides HSERO_RS06460 and HSERO_RS06465 are separated by 10 nucleotides HSERO_RS06465 and HSERO_RS06470 are separated by 87 nucleotides
HSERO_RS06455: HSERO_RS06455 - LysR family transcriptional regulator, at 1,457,801 to 1,458,712
_RS06455
HSERO_RS06460: HSERO_RS06460 - hypothetical protein, at 1,458,931 to 1,459,431
_RS06460
HSERO_RS06465: HSERO_RS06465 - cell envelope biogenesis protein OmpA, at 1,459,442 to 1,460,014
_RS06465
HSERO_RS06470: HSERO_RS06470 - methyl-accepting chemotaxis protein, at 1,460,102 to 1,461,823
_RS06470
Position (kb) 1458
1459
1460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1458.094 kb on + strand, within HSERO_RS06455 at 1458.102 kb on - strand, within HSERO_RS06455 at 1458.250 kb on + strand, within HSERO_RS06455 at 1458.435 kb on + strand, within HSERO_RS06455 at 1458.517 kb on + strand, within HSERO_RS06455 at 1458.531 kb on - strand, within HSERO_RS06455 at 1458.747 kb on + strand at 1458.867 kb on - strand at 1458.981 kb on - strand, within HSERO_RS06460 at 1459.085 kb on + strand at 1459.140 kb on + strand, within HSERO_RS06460 at 1459.187 kb on + strand, within HSERO_RS06460 at 1459.322 kb on + strand, within HSERO_RS06460 at 1459.617 kb on + strand, within HSERO_RS06465 at 1459.648 kb on + strand, within HSERO_RS06465 at 1460.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 1,458,094 + HSERO_RS06455 0.32 -1.5 1,458,102 - HSERO_RS06455 0.33 +0.0 1,458,250 + HSERO_RS06455 0.49 -0.2 1,458,435 + HSERO_RS06455 0.70 -2.0 1,458,517 + HSERO_RS06455 0.79 -1.0 1,458,531 - HSERO_RS06455 0.80 +0.1 1,458,747 + -0.1 1,458,867 - +0.9 1,458,981 - HSERO_RS06460 0.10 -0.3 1,459,085 + +1.9 1,459,140 + HSERO_RS06460 0.42 -0.1 1,459,187 + HSERO_RS06460 0.51 -0.8 1,459,322 + HSERO_RS06460 0.78 -0.6 1,459,617 + HSERO_RS06465 0.31 +0.9 1,459,648 + HSERO_RS06465 0.36 +1.0 1,460,100 + +0.7
Or see this region's nucleotide sequence