Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06425 and HSERO_RS06430 are separated by 45 nucleotides HSERO_RS06430 and HSERO_RS06435 are separated by 59 nucleotides HSERO_RS06435 and HSERO_RS06440 are separated by 37 nucleotides
HSERO_RS06425: HSERO_RS06425 - amine oxidase N, at 1,450,438 to 1,451,790
_RS06425
HSERO_RS06430: HSERO_RS06430 - hypothetical protein, at 1,451,836 to 1,452,222
_RS06430
HSERO_RS06435: HSERO_RS06435 - amino-acid transporter transmembrane protein, at 1,452,282 to 1,453,733
_RS06435
HSERO_RS06440: HSERO_RS06440 - membrane protein, at 1,453,771 to 1,454,880
_RS06440
Position (kb) 1452
1453
1454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1451.429 kb on - strand, within HSERO_RS06425 at 1451.692 kb on + strand at 1451.714 kb on + strand at 1451.759 kb on + strand at 1451.785 kb on + strand at 1451.889 kb on - strand, within HSERO_RS06430 at 1452.331 kb on - strand at 1452.415 kb on + strand at 1452.423 kb on - strand at 1452.573 kb on + strand, within HSERO_RS06435 at 1452.581 kb on - strand, within HSERO_RS06435 at 1452.725 kb on - strand, within HSERO_RS06435 at 1452.757 kb on + strand, within HSERO_RS06435 at 1452.804 kb on - strand, within HSERO_RS06435 at 1452.859 kb on + strand, within HSERO_RS06435 at 1452.996 kb on - strand, within HSERO_RS06435 at 1453.034 kb on + strand, within HSERO_RS06435 at 1453.034 kb on + strand, within HSERO_RS06435 at 1453.042 kb on - strand, within HSERO_RS06435 at 1453.089 kb on + strand, within HSERO_RS06435 at 1453.265 kb on + strand at 1453.265 kb on + strand, within HSERO_RS06435 at 1453.273 kb on - strand, within HSERO_RS06435 at 1453.288 kb on - strand at 1453.361 kb on - strand, within HSERO_RS06435 at 1453.375 kb on + strand, within HSERO_RS06435 at 1453.388 kb on - strand, within HSERO_RS06435 at 1453.446 kb on + strand, within HSERO_RS06435 at 1453.456 kb on + strand, within HSERO_RS06435 at 1453.914 kb on - strand, within HSERO_RS06440 at 1454.010 kb on + strand, within HSERO_RS06440 at 1454.021 kb on + strand, within HSERO_RS06440 at 1454.036 kb on - strand, within HSERO_RS06440 at 1454.045 kb on + strand, within HSERO_RS06440 at 1454.068 kb on - strand, within HSERO_RS06440 at 1454.077 kb on + strand, within HSERO_RS06440 at 1454.085 kb on - strand, within HSERO_RS06440 at 1454.086 kb on - strand, within HSERO_RS06440 at 1454.216 kb on + strand, within HSERO_RS06440 at 1454.248 kb on + strand, within HSERO_RS06440 at 1454.363 kb on + strand, within HSERO_RS06440 at 1454.499 kb on - strand, within HSERO_RS06440 at 1454.536 kb on + strand, within HSERO_RS06440 at 1454.539 kb on - strand, within HSERO_RS06440 at 1454.563 kb on + strand, within HSERO_RS06440 at 1454.715 kb on + strand, within HSERO_RS06440
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 1,451,429 - HSERO_RS06425 0.73 +0.1 1,451,692 + -0.5 1,451,714 + +0.1 1,451,759 + -1.6 1,451,785 + -0.5 1,451,889 - HSERO_RS06430 0.14 -1.0 1,452,331 - -3.1 1,452,415 + +0.1 1,452,423 - -0.3 1,452,573 + HSERO_RS06435 0.20 -0.0 1,452,581 - HSERO_RS06435 0.21 -0.3 1,452,725 - HSERO_RS06435 0.31 +0.2 1,452,757 + HSERO_RS06435 0.33 +0.1 1,452,804 - HSERO_RS06435 0.36 -0.6 1,452,859 + HSERO_RS06435 0.40 -0.1 1,452,996 - HSERO_RS06435 0.49 -0.6 1,453,034 + HSERO_RS06435 0.52 -0.2 1,453,034 + HSERO_RS06435 0.52 -1.4 1,453,042 - HSERO_RS06435 0.52 -0.6 1,453,089 + HSERO_RS06435 0.56 +0.1 1,453,265 + +0.9 1,453,265 + HSERO_RS06435 0.68 -0.4 1,453,273 - HSERO_RS06435 0.68 -0.9 1,453,288 - +1.9 1,453,361 - HSERO_RS06435 0.74 +0.8 1,453,375 + HSERO_RS06435 0.75 +0.4 1,453,388 - HSERO_RS06435 0.76 +0.6 1,453,446 + HSERO_RS06435 0.80 +0.1 1,453,456 + HSERO_RS06435 0.81 -0.5 1,453,914 - HSERO_RS06440 0.13 -1.2 1,454,010 + HSERO_RS06440 0.22 +0.5 1,454,021 + HSERO_RS06440 0.23 +0.6 1,454,036 - HSERO_RS06440 0.24 +0.8 1,454,045 + HSERO_RS06440 0.25 +0.3 1,454,068 - HSERO_RS06440 0.27 +0.1 1,454,077 + HSERO_RS06440 0.28 -0.4 1,454,085 - HSERO_RS06440 0.28 +0.0 1,454,086 - HSERO_RS06440 0.28 +0.2 1,454,216 + HSERO_RS06440 0.40 +0.0 1,454,248 + HSERO_RS06440 0.43 +0.5 1,454,363 + HSERO_RS06440 0.53 +0.9 1,454,499 - HSERO_RS06440 0.66 -0.9 1,454,536 + HSERO_RS06440 0.69 -0.0 1,454,539 - HSERO_RS06440 0.69 -1.2 1,454,563 + HSERO_RS06440 0.71 -0.1 1,454,715 + HSERO_RS06440 0.85 -0.4
Or see this region's nucleotide sequence