Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06415

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,448,020	+		HSERO_RS06410	0.55	+0.1
1,448,286	+		HSERO_RS06410	0.68	+0.1
1,448,351	-		HSERO_RS06410	0.71	-0.6
1,448,351	-		HSERO_RS06410	0.71	+0.2
1,448,448	-		HSERO_RS06410	0.75	+0.1
1,448,513	-		HSERO_RS06410	0.79	+0.3
1,448,534	+		HSERO_RS06410	0.80	+0.1
1,448,537	-		HSERO_RS06410	0.80	+0.9
1,448,572	-		HSERO_RS06410	0.81	-0.6
1,448,579	+		HSERO_RS06410	0.82	-2.3
1,448,641	-		HSERO_RS06410	0.85	-0.1
1,448,734	+		HSERO_RS06410	0.89	+0.4
1,449,031	-				+0.1
1,449,059	-				-0.1
1,449,131	+		HSERO_RS06415	0.15	+0.1
1,449,174	-		HSERO_RS06415	0.19	+1.2
1,449,217	+		HSERO_RS06415	0.23	-0.1
1,449,228	+		HSERO_RS06415	0.25	-0.1
1,449,236	-		HSERO_RS06415	0.25	-0.1
1,449,277	-		HSERO_RS06415	0.30	-0.1
1,449,555	-		HSERO_RS06415	0.58	+0.4
1,449,714	+		HSERO_RS06415	0.74	+0.7
1,450,003	-				+0.2
1,450,046	+				-0.7
1,450,267	+		HSERO_RS06420	0.54	-1.1
1,450,321	+		HSERO_RS06420	0.74	-1.2
1,450,389	+				-0.1
1,450,407	-				-0.5
1,450,416	+				+0.0
1,450,424	-				-0.3
1,450,493	+				-0.9
1,450,554	+				-0.7
1,450,695	+		HSERO_RS06425	0.19	+0.8
1,450,708	-		HSERO_RS06425	0.20	-0.1
1,450,799	+		HSERO_RS06425	0.27	+0.3
1,450,809	+		HSERO_RS06425	0.27	-0.6