Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05030

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,111,070	-				+0.4
1,111,320	+		HSERO_RS05025	0.23	-0.7
1,111,348	+				+2.0
1,111,459	+		HSERO_RS05025	0.39	+0.8
1,111,554	+		HSERO_RS05025	0.50	+0.1
1,111,562	-		HSERO_RS05025	0.51	+0.8
1,111,845	-		HSERO_RS05025	0.84	+1.1
1,111,976	-				+0.3
1,112,274	+		HSERO_RS05030	0.22	+0.2
1,112,279	+		HSERO_RS05030	0.23	+0.3
1,112,381	-		HSERO_RS05030	0.32	+0.5
1,112,398	-		HSERO_RS05030	0.33	+0.7
1,112,497	-		HSERO_RS05030	0.42	+0.2
1,112,548	+		HSERO_RS05030	0.46	-0.4
1,112,626	-		HSERO_RS05030	0.53	-0.0
1,112,656	+		HSERO_RS05030	0.55	+0.0
1,112,664	-		HSERO_RS05030	0.56	-0.5
1,112,712	-		HSERO_RS05030	0.60	+1.0
1,112,926	-		HSERO_RS05030	0.79	-0.3
1,113,172	+				+0.2
1,113,370	+		HSERO_RS05035	0.18	-0.2
1,113,380	+		HSERO_RS05035	0.19	-0.2
1,113,505	-		HSERO_RS05035	0.33	-3.0
1,113,668	-		HSERO_RS05035	0.50	-2.2
1,113,778	-		HSERO_RS05035	0.62	-0.4
1,113,848	-		HSERO_RS05035	0.70	+0.7
1,113,940	+		HSERO_RS05035	0.80	+1.1
1,114,033	+		HSERO_RS05035	0.90	-0.2
1,114,041	-				+1.4
1,114,064	+				-0.1
1,114,068	+				-0.3