Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05015

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,107,209	-		HSERO_RS05010	0.82	-0.8
1,107,282	+		HSERO_RS05010	0.84	+0.4
1,107,315	+		HSERO_RS05010	0.85	+1.0
1,107,400	+		HSERO_RS05010	0.86	+0.5
1,107,400	+		HSERO_RS05010	0.86	-1.8
1,107,408	-		HSERO_RS05010	0.86	-1.4
1,107,458	-		HSERO_RS05010	0.88	-0.6
1,107,517	-		HSERO_RS05010	0.89	-0.3
1,107,529	+		HSERO_RS05010	0.89	+0.0
1,107,635	-				-0.9
1,107,651	+				-0.9
1,107,661	+				-0.4
1,107,702	+				-0.6
1,107,775	-				-0.9
1,107,813	-				-0.4
1,107,852	-				+0.8
1,107,945	-				+0.3
1,108,206	+				-0.1
1,108,305	-		HSERO_RS05015	0.14	-1.0
1,108,360	-		HSERO_RS05015	0.17	-1.1
1,108,588	-		HSERO_RS05015	0.31	-0.1
1,108,602	+		HSERO_RS05015	0.31	+2.4
1,108,610	-		HSERO_RS05015	0.32	+0.1
1,108,668	-		HSERO_RS05015	0.35	+0.6
1,108,708	-		HSERO_RS05015	0.38	-0.4
1,108,710	+		HSERO_RS05015	0.38	-2.0
1,108,801	+		HSERO_RS05015	0.43	-0.0
1,109,056	+		HSERO_RS05015	0.59	+0.1
1,109,183	+		HSERO_RS05015	0.66	-1.1
1,109,418	+		HSERO_RS05015	0.80	-0.4
1,109,418	-		HSERO_RS05015	0.80	+0.2
1,109,420	+		HSERO_RS05015	0.80	-0.3
1,109,472	+		HSERO_RS05015	0.83	-1.2
1,109,548	+		HSERO_RS05015	0.88	-0.2
1,109,549	-		HSERO_RS05015	0.88	+0.3
1,109,584	+				-0.7
1,109,587	-				-0.9
1,109,775	+				+0.5
1,109,805	+				+1.5
1,110,134	-		HSERO_RS05020	0.31	+1.0
1,110,341	+		HSERO_RS05020	0.53	+0.5
1,110,354	-		HSERO_RS05020	0.55	+0.9
1,110,487	+		HSERO_RS05020	0.69	+0.1
1,110,663	+		HSERO_RS05020	0.88	+0.1