Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05010

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
1,102,400	-		HSERO_RS05005	0.20	-0.1
1,102,447	-		HSERO_RS05005	0.25	+0.2
1,102,503	+		HSERO_RS05005	0.31	+0.3
1,102,526	+		HSERO_RS05005	0.33	-0.2
1,102,533	+		HSERO_RS05005	0.34	+0.6
1,102,613	+		HSERO_RS05005	0.42	-0.1
1,102,700	+				-0.0
1,102,744	-		HSERO_RS05005	0.55	-0.3
1,102,784	+		HSERO_RS05005	0.59	+0.4
1,102,797	-		HSERO_RS05005	0.61	-0.0
1,102,900	-		HSERO_RS05005	0.71	-0.2
1,102,900	-		HSERO_RS05005	0.71	+0.7
1,102,982	-		HSERO_RS05005	0.80	-0.3
1,103,022	+		HSERO_RS05005	0.84	+0.0
1,103,067	-		HSERO_RS05005	0.88	-0.0
1,103,074	+		HSERO_RS05005	0.89	-0.4
1,103,165	+				+0.7
1,103,183	-				+0.4
1,103,266	-				+0.3
1,103,315	+				+0.2
1,103,396	+				-0.0
1,103,404	-				+0.1
1,103,455	-				-0.4
1,103,536	+				-0.0
1,103,536	+				+1.5
1,103,563	+				+1.4
1,103,563	+				+0.4
1,103,571	-				+0.4
1,103,571	-				+1.2
1,103,571	-				-1.0
1,103,571	-				-1.6
1,103,620	+				+0.7
1,103,653	-				-0.6
1,103,711	+				+0.0
1,103,719	-				-0.8
1,103,826	+		HSERO_RS05010	0.10	+0.8
1,103,984	+		HSERO_RS05010	0.14	+0.4
1,104,018	-		HSERO_RS05010	0.14	+0.1
1,104,253	+		HSERO_RS05010	0.19	-1.4
1,104,507	+		HSERO_RS05010	0.25	+0.8
1,104,555	-		HSERO_RS05010	0.26	+0.0
1,104,662	+		HSERO_RS05010	0.28	-0.7
1,104,669	+		HSERO_RS05010	0.28	-0.3
1,104,729	+		HSERO_RS05010	0.30	-0.6
1,104,754	+		HSERO_RS05010	0.30	-0.4
1,104,762	-		HSERO_RS05010	0.30	-0.0
1,104,762	-		HSERO_RS05010	0.30	+1.4
1,104,801	+		HSERO_RS05010	0.31	+0.2
1,104,809	-				+1.0
1,104,921	-		HSERO_RS05010	0.34	+0.4
1,105,002	+		HSERO_RS05010	0.35	+0.5
1,105,047	+		HSERO_RS05010	0.36	-0.0
1,105,341	+		HSERO_RS05010	0.43	-1.6
1,105,348	-		HSERO_RS05010	0.43	+0.5
1,105,484	-		HSERO_RS05010	0.46	+0.3
1,105,785	+		HSERO_RS05010	0.52	+0.6
1,105,826	+		HSERO_RS05010	0.53	+0.7
1,105,853	-		HSERO_RS05010	0.53	-0.8
1,105,935	-		HSERO_RS05010	0.55	-0.7
1,105,963	-		HSERO_RS05010	0.56	-0.1
1,106,021	-		HSERO_RS05010	0.57	+0.3
1,106,058	+		HSERO_RS05010	0.58	-0.9
1,106,282	-		HSERO_RS05010	0.63	+0.0
1,106,351	+		HSERO_RS05010	0.64	+1.6
1,106,407	-		HSERO_RS05010	0.65	-0.4
1,106,457	-		HSERO_RS05010	0.66	-0.0
1,106,548	-		HSERO_RS05010	0.68	-1.5
1,106,665	-		HSERO_RS05010	0.71	-0.2
1,106,771	+		HSERO_RS05010	0.73	+1.1
1,106,926	-		HSERO_RS05010	0.76	+0.0
1,107,002	-				+1.3
1,107,209	-		HSERO_RS05010	0.82	-0.8
1,107,282	+		HSERO_RS05010	0.84	+0.4
1,107,315	+		HSERO_RS05010	0.85	+1.0
1,107,400	+		HSERO_RS05010	0.86	+0.5
1,107,400	+		HSERO_RS05010	0.86	-1.8
1,107,408	-		HSERO_RS05010	0.86	-1.4
1,107,458	-		HSERO_RS05010	0.88	-0.6
1,107,517	-		HSERO_RS05010	0.89	-0.3
1,107,529	+		HSERO_RS05010	0.89	+0.0
1,107,635	-				-0.9
1,107,651	+				-0.9
1,107,661	+				-0.4
1,107,702	+				-0.6
1,107,775	-				-0.9
1,107,813	-				-0.4
1,107,852	-				+0.8
1,107,945	-				+0.3
1,108,206	+				-0.1
1,108,305	-		HSERO_RS05015	0.14	-1.0
1,108,360	-		HSERO_RS05015	0.17	-1.1
1,108,588	-		HSERO_RS05015	0.31	-0.1
1,108,602	+		HSERO_RS05015	0.31	+2.4
1,108,610	-		HSERO_RS05015	0.32	+0.1
1,108,668	-		HSERO_RS05015	0.35	+0.6
1,108,708	-		HSERO_RS05015	0.38	-0.4
1,108,710	+		HSERO_RS05015	0.38	-2.0
1,108,801	+		HSERO_RS05015	0.43	-0.0