Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02415 and HSERO_RS02420 are separated by 611 nucleotides HSERO_RS02420 and HSERO_RS02425 are separated by 24 nucleotides HSERO_RS02425 and HSERO_RS02430 are separated by 182 nucleotides
HSERO_RS02415: HSERO_RS02415 - hemolysin D, at 530,092 to 531,300
_RS02415
HSERO_RS02420: HSERO_RS02420 - TetR family transcriptional regulator, at 531,912 to 532,547
_RS02420
HSERO_RS02425: HSERO_RS02425 - transcriptional activator, at 532,572 to 533,069
_RS02425
HSERO_RS02430: HSERO_RS02430 - sulfurtransferase, at 533,252 to 533,575
_RS02430
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 531.004 kb on - strand, within HSERO_RS02415 at 531.004 kb on - strand, within HSERO_RS02415 at 531.055 kb on - strand, within HSERO_RS02415 at 531.120 kb on + strand, within HSERO_RS02415 at 531.127 kb on - strand, within HSERO_RS02415 at 531.146 kb on - strand, within HSERO_RS02415 at 531.236 kb on - strand at 531.271 kb on - strand at 531.357 kb on + strand at 532.470 kb on - strand, within HSERO_RS02420 at 532.568 kb on + strand at 532.643 kb on + strand, within HSERO_RS02425 at 532.732 kb on - strand, within HSERO_RS02425 at 532.872 kb on + strand, within HSERO_RS02425 at 532.881 kb on + strand, within HSERO_RS02425 at 532.889 kb on - strand at 533.023 kb on + strand at 533.031 kb on - strand at 533.072 kb on - strand at 533.309 kb on - strand, within HSERO_RS02430 at 533.392 kb on + strand, within HSERO_RS02430 at 533.413 kb on + strand, within HSERO_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 530,996 + HSERO_RS02415 0.75 -3.8 530,996 + HSERO_RS02415 0.75 -2.7 530,996 + HSERO_RS02415 0.75 -3.9 530,996 + HSERO_RS02415 0.75 -2.9 530,996 + HSERO_RS02415 0.75 -1.5 530,996 + HSERO_RS02415 0.75 -1.6 531,004 - HSERO_RS02415 0.75 -1.7 531,004 - HSERO_RS02415 0.75 -0.7 531,055 - HSERO_RS02415 0.80 -3.7 531,120 + HSERO_RS02415 0.85 -2.5 531,127 - HSERO_RS02415 0.86 -0.5 531,146 - HSERO_RS02415 0.87 -2.0 531,236 - -2.5 531,271 - -3.6 531,357 + -2.5 532,470 - HSERO_RS02420 0.88 -0.3 532,568 + +0.0 532,643 + HSERO_RS02425 0.14 +0.1 532,732 - HSERO_RS02425 0.32 -0.8 532,872 + HSERO_RS02425 0.60 -1.1 532,881 + HSERO_RS02425 0.62 -0.8 532,889 - -1.2 533,023 + -0.7 533,031 - +0.6 533,072 - +0.6 533,309 - HSERO_RS02430 0.18 -0.2 533,392 + HSERO_RS02430 0.43 -0.1 533,413 + HSERO_RS02430 0.50 -2.1
Or see this region's nucleotide sequence