Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02415

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02410 and HSERO_RS02415 are separated by 11 nucleotidesHSERO_RS02415 and HSERO_RS02420 are separated by 611 nucleotides HSERO_RS02410: HSERO_RS02410 - acriflavine resistance protein B, at 526,934 to 530,080 _RS02410 HSERO_RS02415: HSERO_RS02415 - hemolysin D, at 530,092 to 531,300 _RS02415 HSERO_RS02420: HSERO_RS02420 - TetR family transcriptional regulator, at 531,912 to 532,547 _RS02420 Position (kb) 530 531 532Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 529.141 kb on - strand, within HSERO_RS02410at 529.272 kb on + strand, within HSERO_RS02410at 529.356 kb on - strand, within HSERO_RS02410at 529.383 kb on - strand, within HSERO_RS02410at 529.491 kb on - strand, within HSERO_RS02410at 529.637 kb on - strand, within HSERO_RS02410at 529.762 kb on - strand, within HSERO_RS02410at 529.762 kb on - strand, within HSERO_RS02410at 529.795 kb on - strandat 529.809 kb on - strandat 529.856 kb on - strandat 530.053 kb on - strandat 530.193 kb on + strandat 530.321 kb on + strand, within HSERO_RS02415at 530.424 kb on + strand, within HSERO_RS02415at 530.429 kb on - strand, within HSERO_RS02415at 530.455 kb on - strand, within HSERO_RS02415at 530.499 kb on - strand, within HSERO_RS02415at 530.594 kb on + strand, within HSERO_RS02415at 530.602 kb on - strand, within HSERO_RS02415at 530.612 kb on + strand, within HSERO_RS02415at 530.637 kb on + strand, within HSERO_RS02415at 530.647 kb on + strand, within HSERO_RS02415at 530.655 kb on - strand, within HSERO_RS02415at 530.689 kb on - strand, within HSERO_RS02415at 530.749 kb on + strand, within HSERO_RS02415at 530.791 kb on - strandat 530.892 kb on - strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 531.004 kb on - strand, within HSERO_RS02415at 531.004 kb on - strand, within HSERO_RS02415at 531.055 kb on - strand, within HSERO_RS02415at 531.120 kb on + strand, within HSERO_RS02415at 531.127 kb on - strand, within HSERO_RS02415at 531.146 kb on - strand, within HSERO_RS02415at 531.236 kb on - strandat 531.271 kb on - strandat 531.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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529,141 - HSERO_RS02410 0.70 -2.1
529,272 + HSERO_RS02410 0.74 -5.5
529,356 - HSERO_RS02410 0.77 -3.1
529,383 - HSERO_RS02410 0.78 -2.8
529,491 - HSERO_RS02410 0.81 -2.8
529,637 - HSERO_RS02410 0.86 -2.1
529,762 - HSERO_RS02410 0.90 -0.5
529,762 - HSERO_RS02410 0.90 -2.4
529,795 - -2.9
529,809 - -3.7
529,856 - -1.6
530,053 - -2.9
530,193 + -3.0
530,321 + HSERO_RS02415 0.19 -3.1
530,424 + HSERO_RS02415 0.27 -4.5
530,429 - HSERO_RS02415 0.28 -0.1
530,455 - HSERO_RS02415 0.30 -3.4
530,499 - HSERO_RS02415 0.34 -1.7
530,594 + HSERO_RS02415 0.42 -2.6
530,602 - HSERO_RS02415 0.42 -1.5
530,612 + HSERO_RS02415 0.43 -3.1
530,637 + HSERO_RS02415 0.45 -2.4
530,647 + HSERO_RS02415 0.46 -3.5
530,655 - HSERO_RS02415 0.47 -2.1
530,689 - HSERO_RS02415 0.49 -1.4
530,749 + HSERO_RS02415 0.54 -2.6
530,791 - +1.1
530,892 - HSERO_RS02415 0.66 -2.1
530,996 + HSERO_RS02415 0.75 -3.8
530,996 + HSERO_RS02415 0.75 -2.7
530,996 + HSERO_RS02415 0.75 -3.9
530,996 + HSERO_RS02415 0.75 -2.9
530,996 + HSERO_RS02415 0.75 -1.5
530,996 + HSERO_RS02415 0.75 -1.6
531,004 - HSERO_RS02415 0.75 -1.7
531,004 - HSERO_RS02415 0.75 -0.7
531,055 - HSERO_RS02415 0.80 -3.7
531,120 + HSERO_RS02415 0.85 -2.5
531,127 - HSERO_RS02415 0.86 -0.5
531,146 - HSERO_RS02415 0.87 -2.0
531,236 - -2.5
531,271 - -3.6
531,357 + -2.5

Or see this region's nucleotide sequence