Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02405 and HSERO_RS02410 are separated by 2 nucleotides HSERO_RS02410 and HSERO_RS02415 are separated by 11 nucleotides
HSERO_RS02405: HSERO_RS02405 - multidrug transporter, at 525,480 to 526,931
_RS02405
HSERO_RS02410: HSERO_RS02410 - acriflavine resistance protein B, at 526,934 to 530,080
_RS02410
HSERO_RS02415: HSERO_RS02415 - hemolysin D, at 530,092 to 531,300
_RS02415
Position (kb) 526
527
528
529
530
531 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 526.263 kb on + strand, within HSERO_RS02405 at 526.323 kb on + strand, within HSERO_RS02405 at 526.344 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.872 kb on + strand at 526.984 kb on + strand at 527.231 kb on - strand at 527.324 kb on - strand, within HSERO_RS02410 at 527.351 kb on + strand, within HSERO_RS02410 at 527.766 kb on + strand, within HSERO_RS02410 at 527.897 kb on - strand, within HSERO_RS02410 at 528.122 kb on - strand, within HSERO_RS02410 at 528.199 kb on - strand, within HSERO_RS02410 at 528.301 kb on - strand, within HSERO_RS02410 at 528.424 kb on + strand, within HSERO_RS02410 at 528.424 kb on + strand, within HSERO_RS02410 at 528.432 kb on - strand, within HSERO_RS02410 at 528.445 kb on + strand, within HSERO_RS02410 at 528.479 kb on - strand, within HSERO_RS02410 at 528.742 kb on + strand, within HSERO_RS02410 at 528.876 kb on - strand, within HSERO_RS02410 at 528.945 kb on + strand, within HSERO_RS02410 at 529.141 kb on - strand, within HSERO_RS02410 at 529.272 kb on + strand, within HSERO_RS02410 at 529.356 kb on - strand, within HSERO_RS02410 at 529.383 kb on - strand, within HSERO_RS02410 at 529.491 kb on - strand, within HSERO_RS02410 at 529.637 kb on - strand, within HSERO_RS02410 at 529.762 kb on - strand, within HSERO_RS02410 at 529.762 kb on - strand, within HSERO_RS02410 at 529.795 kb on - strand at 529.809 kb on - strand at 529.856 kb on - strand at 530.053 kb on - strand at 530.193 kb on + strand at 530.321 kb on + strand, within HSERO_RS02415 at 530.424 kb on + strand, within HSERO_RS02415 at 530.429 kb on - strand, within HSERO_RS02415 at 530.455 kb on - strand, within HSERO_RS02415 at 530.499 kb on - strand, within HSERO_RS02415 at 530.594 kb on + strand, within HSERO_RS02415 at 530.602 kb on - strand, within HSERO_RS02415 at 530.612 kb on + strand, within HSERO_RS02415 at 530.637 kb on + strand, within HSERO_RS02415 at 530.647 kb on + strand, within HSERO_RS02415 at 530.655 kb on - strand, within HSERO_RS02415 at 530.689 kb on - strand, within HSERO_RS02415 at 530.749 kb on + strand, within HSERO_RS02415 at 530.791 kb on - strand at 530.892 kb on - strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 530.996 kb on + strand, within HSERO_RS02415 at 531.004 kb on - strand, within HSERO_RS02415 at 531.004 kb on - strand, within HSERO_RS02415 at 531.055 kb on - strand, within HSERO_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 526,263 + HSERO_RS02405 0.54 -3.2 526,323 + HSERO_RS02405 0.58 -2.7 526,344 - HSERO_RS02405 0.60 -4.1 526,359 - HSERO_RS02405 0.61 -0.1 526,359 - HSERO_RS02405 0.61 -3.6 526,872 + -3.4 526,984 + -2.0 527,231 - -2.0 527,324 - HSERO_RS02410 0.12 -1.0 527,351 + HSERO_RS02410 0.13 -2.8 527,766 + HSERO_RS02410 0.26 -1.6 527,897 - HSERO_RS02410 0.31 -1.5 528,122 - HSERO_RS02410 0.38 -2.6 528,199 - HSERO_RS02410 0.40 -2.6 528,301 - HSERO_RS02410 0.43 -1.6 528,424 + HSERO_RS02410 0.47 -1.9 528,424 + HSERO_RS02410 0.47 -4.2 528,432 - HSERO_RS02410 0.48 -1.4 528,445 + HSERO_RS02410 0.48 -2.7 528,479 - HSERO_RS02410 0.49 -2.2 528,742 + HSERO_RS02410 0.57 -2.9 528,876 - HSERO_RS02410 0.62 -0.5 528,945 + HSERO_RS02410 0.64 -3.4 529,141 - HSERO_RS02410 0.70 -2.1 529,272 + HSERO_RS02410 0.74 -5.5 529,356 - HSERO_RS02410 0.77 -3.1 529,383 - HSERO_RS02410 0.78 -2.8 529,491 - HSERO_RS02410 0.81 -2.8 529,637 - HSERO_RS02410 0.86 -2.1 529,762 - HSERO_RS02410 0.90 -0.5 529,762 - HSERO_RS02410 0.90 -2.4 529,795 - -2.9 529,809 - -3.7 529,856 - -1.6 530,053 - -2.9 530,193 + -3.0 530,321 + HSERO_RS02415 0.19 -3.1 530,424 + HSERO_RS02415 0.27 -4.5 530,429 - HSERO_RS02415 0.28 -0.1 530,455 - HSERO_RS02415 0.30 -3.4 530,499 - HSERO_RS02415 0.34 -1.7 530,594 + HSERO_RS02415 0.42 -2.6 530,602 - HSERO_RS02415 0.42 -1.5 530,612 + HSERO_RS02415 0.43 -3.1 530,637 + HSERO_RS02415 0.45 -2.4 530,647 + HSERO_RS02415 0.46 -3.5 530,655 - HSERO_RS02415 0.47 -2.1 530,689 - HSERO_RS02415 0.49 -1.4 530,749 + HSERO_RS02415 0.54 -2.6 530,791 - +1.1 530,892 - HSERO_RS02415 0.66 -2.1 530,996 + HSERO_RS02415 0.75 -3.8 530,996 + HSERO_RS02415 0.75 -2.7 530,996 + HSERO_RS02415 0.75 -3.9 530,996 + HSERO_RS02415 0.75 -2.9 530,996 + HSERO_RS02415 0.75 -1.5 530,996 + HSERO_RS02415 0.75 -1.6 531,004 - HSERO_RS02415 0.75 -1.7 531,004 - HSERO_RS02415 0.75 -0.7 531,055 - HSERO_RS02415 0.80 -3.7
Or see this region's nucleotide sequence