Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02395 and HSERO_RS02400 are separated by 126 nucleotides HSERO_RS02400 and HSERO_RS02405 are separated by 619 nucleotides HSERO_RS02405 and HSERO_RS02410 are separated by 2 nucleotides
HSERO_RS02395: HSERO_RS02395 - 23S ribosomal RNA, at 521,732 to 524,621
_RS02395
HSERO_RS02400: HSERO_RS02400 - 5S ribosomal RNA, at 524,748 to 524,860
_RS02400
HSERO_RS02405: HSERO_RS02405 - multidrug transporter, at 525,480 to 526,931
_RS02405
HSERO_RS02410: HSERO_RS02410 - acriflavine resistance protein B, at 526,934 to 530,080
_RS02410
Position (kb) 525
526
527 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 525.195 kb on + strand at 525.336 kb on + strand at 525.393 kb on - strand at 525.393 kb on - strand at 525.540 kb on - strand at 525.587 kb on - strand at 525.831 kb on + strand, within HSERO_RS02405 at 525.918 kb on - strand, within HSERO_RS02405 at 526.263 kb on + strand, within HSERO_RS02405 at 526.323 kb on + strand, within HSERO_RS02405 at 526.344 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.872 kb on + strand at 526.984 kb on + strand at 527.231 kb on - strand at 527.324 kb on - strand, within HSERO_RS02410 at 527.351 kb on + strand, within HSERO_RS02410 at 527.766 kb on + strand, within HSERO_RS02410 at 527.897 kb on - strand, within HSERO_RS02410
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 525,195 + +0.0 525,336 + -2.2 525,393 - -1.9 525,393 - +0.7 525,540 - -1.3 525,587 - -2.6 525,831 + HSERO_RS02405 0.24 -3.4 525,918 - HSERO_RS02405 0.30 -2.0 526,263 + HSERO_RS02405 0.54 -3.2 526,323 + HSERO_RS02405 0.58 -2.7 526,344 - HSERO_RS02405 0.60 -4.1 526,359 - HSERO_RS02405 0.61 -0.1 526,359 - HSERO_RS02405 0.61 -3.6 526,872 + -3.4 526,984 + -2.0 527,231 - -2.0 527,324 - HSERO_RS02410 0.12 -1.0 527,351 + HSERO_RS02410 0.13 -2.8 527,766 + HSERO_RS02410 0.26 -1.6 527,897 - HSERO_RS02410 0.31 -1.5
Or see this region's nucleotide sequence