Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01570 and HSERO_RS01575 are separated by 306 nucleotides HSERO_RS01575 and HSERO_RS01580 are separated by 299 nucleotides
HSERO_RS01570: HSERO_RS01570 - esterase, at 348,600 to 349,598
_RS01570
HSERO_RS01575: HSERO_RS01575 - transcriptional regulator, at 349,905 to 350,918
_RS01575
HSERO_RS01580: HSERO_RS01580 - AraC family transcriptional regulator, at 351,218 to 352,234
_RS01580
Position (kb) 349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 348.958 kb on + strand, within HSERO_RS01570 at 348.959 kb on - strand, within HSERO_RS01570 at 349.148 kb on + strand, within HSERO_RS01570 at 349.151 kb on - strand, within HSERO_RS01570 at 349.156 kb on - strand, within HSERO_RS01570 at 349.743 kb on - strand at 349.753 kb on + strand at 349.807 kb on - strand at 349.888 kb on + strand at 349.890 kb on + strand at 349.978 kb on + strand at 350.020 kb on - strand, within HSERO_RS01575 at 350.170 kb on + strand, within HSERO_RS01575 at 350.175 kb on + strand, within HSERO_RS01575 at 350.279 kb on + strand, within HSERO_RS01575 at 350.343 kb on - strand, within HSERO_RS01575 at 350.406 kb on + strand, within HSERO_RS01575 at 350.432 kb on - strand, within HSERO_RS01575 at 350.454 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand at 350.470 kb on - strand, within HSERO_RS01575 at 350.637 kb on - strand, within HSERO_RS01575 at 350.759 kb on - strand, within HSERO_RS01575 at 350.831 kb on + strand at 350.869 kb on - strand at 350.956 kb on - strand at 351.124 kb on + strand at 351.305 kb on - strand at 351.364 kb on + strand, within HSERO_RS01580 at 351.452 kb on - strand, within HSERO_RS01580 at 351.458 kb on - strand, within HSERO_RS01580 at 351.500 kb on - strand, within HSERO_RS01580 at 351.541 kb on + strand, within HSERO_RS01580 at 351.555 kb on + strand, within HSERO_RS01580 at 351.582 kb on + strand, within HSERO_RS01580 at 351.597 kb on + strand, within HSERO_RS01580 at 351.597 kb on + strand, within HSERO_RS01580 at 351.868 kb on + strand, within HSERO_RS01580 at 351.907 kb on + strand, within HSERO_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 348,958 + HSERO_RS01570 0.36 +0.3 348,959 - HSERO_RS01570 0.36 +0.8 349,148 + HSERO_RS01570 0.55 -0.3 349,151 - HSERO_RS01570 0.55 -0.6 349,156 - HSERO_RS01570 0.56 +0.4 349,743 - +0.1 349,753 + -0.2 349,807 - -1.2 349,888 + -0.3 349,890 + -1.9 349,978 + -0.2 350,020 - HSERO_RS01575 0.11 -0.2 350,170 + HSERO_RS01575 0.26 +0.8 350,175 + HSERO_RS01575 0.27 +0.2 350,279 + HSERO_RS01575 0.37 +1.8 350,343 - HSERO_RS01575 0.43 +0.5 350,406 + HSERO_RS01575 0.49 +1.1 350,432 - HSERO_RS01575 0.52 -0.1 350,454 - HSERO_RS01575 0.54 +1.0 350,470 - HSERO_RS01575 0.56 +0.9 350,470 - HSERO_RS01575 0.56 -2.6 350,470 - -0.8 350,470 - HSERO_RS01575 0.56 +0.3 350,637 - HSERO_RS01575 0.72 -0.9 350,759 - HSERO_RS01575 0.84 +0.6 350,831 + -1.0 350,869 - +2.6 350,956 - +0.0 351,124 + -3.1 351,305 - -0.2 351,364 + HSERO_RS01580 0.14 -0.2 351,452 - HSERO_RS01580 0.23 +0.1 351,458 - HSERO_RS01580 0.24 +1.0 351,500 - HSERO_RS01580 0.28 +1.2 351,541 + HSERO_RS01580 0.32 +0.0 351,555 + HSERO_RS01580 0.33 +0.4 351,582 + HSERO_RS01580 0.36 -0.1 351,597 + HSERO_RS01580 0.37 +2.0 351,597 + HSERO_RS01580 0.37 +0.3 351,868 + HSERO_RS01580 0.64 -1.0 351,907 + HSERO_RS01580 0.68 -0.4
Or see this region's nucleotide sequence