Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01560 and HSERO_RS01565 are separated by 99 nucleotides HSERO_RS01565 and HSERO_RS01570 are separated by 10 nucleotides
HSERO_RS01560: HSERO_RS01560 - transporter, at 344,075 to 347,290
_RS01560
HSERO_RS01565: HSERO_RS01565 - hemolysin secretion protein D, at 347,390 to 348,589
_RS01565
HSERO_RS01570: HSERO_RS01570 - esterase, at 348,600 to 349,598
_RS01570
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1 at 346.474 kb on + strand, within HSERO_RS01560 at 346.727 kb on - strand, within HSERO_RS01560 at 346.856 kb on + strand, within HSERO_RS01560 at 346.890 kb on + strand, within HSERO_RS01560 at 346.958 kb on + strand, within HSERO_RS01560 at 346.979 kb on - strand at 347.081 kb on - strand at 347.086 kb on - strand at 347.332 kb on - strand at 347.335 kb on + strand at 347.401 kb on - strand at 347.451 kb on - strand at 347.538 kb on - strand, within HSERO_RS01565 at 347.564 kb on - strand, within HSERO_RS01565 at 347.678 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.774 kb on + strand, within HSERO_RS01565 at 347.782 kb on - strand, within HSERO_RS01565 at 347.797 kb on - strand, within HSERO_RS01565 at 347.836 kb on - strand, within HSERO_RS01565 at 347.969 kb on - strand, within HSERO_RS01565 at 347.976 kb on + strand, within HSERO_RS01565 at 348.189 kb on - strand, within HSERO_RS01565 at 348.499 kb on - strand at 348.606 kb on - strand at 348.645 kb on + strand at 348.665 kb on - strand at 348.958 kb on + strand, within HSERO_RS01570 at 348.959 kb on - strand, within HSERO_RS01570 at 349.148 kb on + strand, within HSERO_RS01570 at 349.151 kb on - strand, within HSERO_RS01570 at 349.156 kb on - strand, within HSERO_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 346,474 + HSERO_RS01560 0.75 +0.7 346,727 - HSERO_RS01560 0.82 +0.3 346,856 + HSERO_RS01560 0.86 -0.3 346,890 + HSERO_RS01560 0.88 -1.1 346,958 + HSERO_RS01560 0.90 +0.6 346,979 - +0.5 347,081 - +0.8 347,086 - -0.6 347,332 - +0.3 347,335 + -0.1 347,401 - -0.1 347,451 - +0.7 347,538 - HSERO_RS01565 0.12 +0.7 347,564 - HSERO_RS01565 0.14 -0.6 347,678 - HSERO_RS01565 0.24 -0.2 347,773 - HSERO_RS01565 0.32 +0.9 347,773 - HSERO_RS01565 0.32 +1.1 347,774 + HSERO_RS01565 0.32 -0.5 347,782 - HSERO_RS01565 0.33 -2.7 347,797 - HSERO_RS01565 0.34 -0.3 347,836 - HSERO_RS01565 0.37 -0.2 347,969 - HSERO_RS01565 0.48 -0.8 347,976 + HSERO_RS01565 0.49 -0.2 348,189 - HSERO_RS01565 0.67 -0.3 348,499 - +0.8 348,606 - -0.9 348,645 + +0.1 348,665 - +0.2 348,958 + HSERO_RS01570 0.36 +0.3 348,959 - HSERO_RS01570 0.36 +0.8 349,148 + HSERO_RS01570 0.55 -0.3 349,151 - HSERO_RS01570 0.55 -0.6 349,156 - HSERO_RS01570 0.56 +0.4
Or see this region's nucleotide sequence