Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01545 and HSERO_RS01550 are separated by 107 nucleotides HSERO_RS01550 and HSERO_RS01555 are separated by 78 nucleotides HSERO_RS01555 and HSERO_RS01560 are separated by 33 nucleotides
HSERO_RS01545: HSERO_RS01545 - sulfate transporter, at 340,347 to 341,837
_RS01545
HSERO_RS01550: HSERO_RS01550 - hypothetical protein, at 341,945 to 342,448
_RS01550
HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041
_RS01555
HSERO_RS01560: HSERO_RS01560 - transporter, at 344,075 to 347,290
_RS01560
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -2
-1
0
1 at 341.678 kb on + strand, within HSERO_RS01545 at 341.724 kb on + strand at 341.724 kb on + strand at 341.746 kb on + strand at 342.015 kb on - strand, within HSERO_RS01550 at 342.056 kb on + strand, within HSERO_RS01550 at 342.239 kb on - strand, within HSERO_RS01550 at 342.296 kb on + strand, within HSERO_RS01550 at 342.523 kb on + strand at 342.531 kb on - strand at 342.597 kb on - strand at 342.755 kb on - strand, within HSERO_RS01555 at 342.755 kb on - strand, within HSERO_RS01555 at 342.821 kb on + strand, within HSERO_RS01555 at 342.829 kb on - strand, within HSERO_RS01555 at 342.886 kb on - strand, within HSERO_RS01555 at 342.928 kb on - strand, within HSERO_RS01555 at 342.979 kb on - strand, within HSERO_RS01555 at 343.380 kb on - strand, within HSERO_RS01555 at 343.422 kb on + strand at 343.440 kb on + strand, within HSERO_RS01555 at 343.467 kb on + strand, within HSERO_RS01555 at 343.472 kb on + strand, within HSERO_RS01555 at 343.477 kb on + strand, within HSERO_RS01555 at 343.565 kb on - strand, within HSERO_RS01555 at 343.705 kb on - strand, within HSERO_RS01555 at 343.742 kb on - strand, within HSERO_RS01555 at 343.776 kb on - strand, within HSERO_RS01555 at 343.834 kb on - strand, within HSERO_RS01555 at 343.845 kb on + strand, within HSERO_RS01555 at 343.942 kb on - strand at 344.178 kb on + strand at 344.212 kb on - strand at 344.246 kb on - strand at 344.316 kb on + strand at 344.347 kb on - strand at 344.478 kb on - strand, within HSERO_RS01560 at 344.485 kb on + strand, within HSERO_RS01560 at 344.526 kb on - strand, within HSERO_RS01560 at 344.625 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 345.024 kb on + strand, within HSERO_RS01560 at 345.032 kb on - strand, within HSERO_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 341,678 + HSERO_RS01545 0.89 +0.7 341,724 + +0.9 341,724 + -0.2 341,746 + -2.1 342,015 - HSERO_RS01550 0.14 -0.1 342,056 + HSERO_RS01550 0.22 -0.6 342,239 - HSERO_RS01550 0.58 -0.3 342,296 + HSERO_RS01550 0.70 -2.1 342,523 + -0.2 342,531 - +0.5 342,597 - -0.8 342,755 - HSERO_RS01555 0.15 +0.3 342,755 - HSERO_RS01555 0.15 -0.3 342,821 + HSERO_RS01555 0.19 +0.2 342,829 - HSERO_RS01555 0.20 -0.1 342,886 - HSERO_RS01555 0.24 +0.5 342,928 - HSERO_RS01555 0.26 +0.0 342,979 - HSERO_RS01555 0.30 -0.2 343,380 - HSERO_RS01555 0.56 +0.2 343,422 + -0.8 343,440 + HSERO_RS01555 0.60 +0.4 343,467 + HSERO_RS01555 0.62 +0.6 343,472 + HSERO_RS01555 0.62 -1.3 343,477 + HSERO_RS01555 0.63 -0.1 343,565 - HSERO_RS01555 0.69 +1.5 343,705 - HSERO_RS01555 0.78 +0.4 343,742 - HSERO_RS01555 0.80 -0.1 343,776 - HSERO_RS01555 0.82 +0.7 343,834 - HSERO_RS01555 0.86 -0.9 343,845 + HSERO_RS01555 0.87 -0.9 343,942 - +0.2 344,178 + +0.3 344,212 - -0.6 344,246 - -0.1 344,316 + -0.5 344,347 - -1.5 344,478 - HSERO_RS01560 0.13 -0.7 344,485 + HSERO_RS01560 0.13 -1.4 344,526 - HSERO_RS01560 0.14 +0.3 344,625 + HSERO_RS01560 0.17 -0.0 344,678 + HSERO_RS01560 0.19 +0.5 344,678 + HSERO_RS01560 0.19 +0.6 345,024 + HSERO_RS01560 0.30 +1.2 345,032 - HSERO_RS01560 0.30 -0.1
Or see this region's nucleotide sequence