Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01325 and HSERO_RS01330 overlap by 1 nucleotides HSERO_RS01330 and HSERO_RS01335 are separated by 60 nucleotides HSERO_RS01335 and HSERO_RS01340 are separated by 26 nucleotides
HSERO_RS01325: HSERO_RS01325 - cation/multidrug efflux protein, at 281,334 to 284,477
_RS01325
HSERO_RS01330: HSERO_RS01330 - RND transporter, at 284,477 to 285,958
_RS01330
HSERO_RS01335: HSERO_RS01335 - sugar ABC transporter permease, at 286,019 to 286,870
_RS01335
HSERO_RS01340: HSERO_RS01340 - sugar ABC transporter permease, at 286,897 to 287,832
_RS01340
Position (kb) 284
285
286 Strain fitness (log2 ratio) -1
0
1 at 283.706 kb on + strand, within HSERO_RS01325 at 283.714 kb on - strand, within HSERO_RS01325 at 284.106 kb on + strand, within HSERO_RS01325 at 284.718 kb on - strand, within HSERO_RS01330 at 285.880 kb on + strand at 285.880 kb on + strand at 285.901 kb on - strand at 285.971 kb on + strand at 286.076 kb on + strand at 286.084 kb on - strand at 286.177 kb on - strand, within HSERO_RS01335 at 286.363 kb on - strand, within HSERO_RS01335 at 286.448 kb on - strand, within HSERO_RS01335 at 286.537 kb on + strand, within HSERO_RS01335 at 286.560 kb on - strand, within HSERO_RS01335 at 286.664 kb on + strand, within HSERO_RS01335 at 286.721 kb on - strand, within HSERO_RS01335 at 286.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 283,706 + HSERO_RS01325 0.75 +0.7 283,714 - HSERO_RS01325 0.76 -0.1 284,106 + HSERO_RS01325 0.88 +1.2 284,718 - HSERO_RS01330 0.16 -0.4 285,880 + -0.8 285,880 + -0.4 285,901 - +0.3 285,971 + -0.0 286,076 + +1.7 286,084 - +0.2 286,177 - HSERO_RS01335 0.19 -0.4 286,363 - HSERO_RS01335 0.40 +0.0 286,448 - HSERO_RS01335 0.50 -0.3 286,537 + HSERO_RS01335 0.61 +0.3 286,560 - HSERO_RS01335 0.63 -0.0 286,664 + HSERO_RS01335 0.76 -1.1 286,721 - HSERO_RS01335 0.82 -0.6 286,914 + +0.8
Or see this region's nucleotide sequence