Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01325

Experiment: A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01320 and HSERO_RS01325 overlap by 4 nucleotidesHSERO_RS01325 and HSERO_RS01330 overlap by 1 nucleotides HSERO_RS01320: HSERO_RS01320 - RND transporter MFP subunit, at 280,264 to 281,337 _RS01320 HSERO_RS01325: HSERO_RS01325 - cation/multidrug efflux protein, at 281,334 to 284,477 _RS01325 HSERO_RS01330: HSERO_RS01330 - RND transporter, at 284,477 to 285,958 _RS01330 Position (kb) 281 282 283 284 285Strain fitness (log2 ratio) -1 0 1at 280.621 kb on + strand, within HSERO_RS01320at 280.736 kb on - strand, within HSERO_RS01320at 280.835 kb on - strand, within HSERO_RS01320at 281.017 kb on - strand, within HSERO_RS01320at 281.143 kb on - strand, within HSERO_RS01320at 281.143 kb on - strand, within HSERO_RS01320at 281.372 kb on - strandat 281.396 kb on - strandat 281.489 kb on + strandat 281.911 kb on - strand, within HSERO_RS01325at 282.505 kb on + strand, within HSERO_RS01325at 282.849 kb on - strand, within HSERO_RS01325at 283.706 kb on + strand, within HSERO_RS01325at 283.714 kb on - strand, within HSERO_RS01325at 284.106 kb on + strand, within HSERO_RS01325at 284.718 kb on - strand, within HSERO_RS01330

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.04 mg/ml
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280,621 + HSERO_RS01320 0.33 +0.7
280,736 - HSERO_RS01320 0.44 +0.9
280,835 - HSERO_RS01320 0.53 +0.4
281,017 - HSERO_RS01320 0.70 -0.6
281,143 - HSERO_RS01320 0.82 +0.2
281,143 - HSERO_RS01320 0.82 +0.2
281,372 - -0.3
281,396 - -0.4
281,489 + +0.4
281,911 - HSERO_RS01325 0.18 +1.0
282,505 + HSERO_RS01325 0.37 -0.1
282,849 - HSERO_RS01325 0.48 +0.1
283,706 + HSERO_RS01325 0.75 +0.7
283,714 - HSERO_RS01325 0.76 -0.1
284,106 + HSERO_RS01325 0.88 +1.2
284,718 - HSERO_RS01330 0.16 -0.4

Or see this region's nucleotide sequence