Experiment: A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00105 and HSERO_RS00110 overlap by 10 nucleotides HSERO_RS00110 and HSERO_RS00115 are separated by 68 nucleotides
HSERO_RS00105: HSERO_RS00105 - hypothetical protein, at 32,022 to 33,752
_RS00105
HSERO_RS00110: HSERO_RS00110 - hypothetical protein, at 33,743 to 34,816
_RS00110
HSERO_RS00115: HSERO_RS00115 - hypothetical protein, at 34,885 to 35,952
_RS00115
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.802 kb on - strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.022 kb on - strand, within HSERO_RS00105 at 33.022 kb on - strand, within HSERO_RS00105 at 33.037 kb on - strand, within HSERO_RS00105 at 33.078 kb on - strand, within HSERO_RS00105 at 33.173 kb on + strand, within HSERO_RS00105 at 33.174 kb on + strand, within HSERO_RS00105 at 33.248 kb on - strand, within HSERO_RS00105 at 33.290 kb on + strand, within HSERO_RS00105 at 33.321 kb on - strand, within HSERO_RS00105 at 33.335 kb on + strand, within HSERO_RS00105 at 33.335 kb on + strand, within HSERO_RS00105 at 33.349 kb on - strand, within HSERO_RS00105 at 33.370 kb on + strand, within HSERO_RS00105 at 33.521 kb on + strand at 33.531 kb on + strand, within HSERO_RS00105 at 33.586 kb on - strand at 33.680 kb on + strand at 33.683 kb on + strand at 33.735 kb on + strand at 33.737 kb on + strand at 33.743 kb on - strand at 33.743 kb on - strand at 33.821 kb on + strand at 33.821 kb on + strand at 33.821 kb on + strand at 33.829 kb on - strand at 33.849 kb on + strand at 33.857 kb on - strand, within HSERO_RS00110 at 33.857 kb on - strand, within HSERO_RS00110 at 33.929 kb on + strand, within HSERO_RS00110 at 33.929 kb on + strand at 33.937 kb on - strand, within HSERO_RS00110 at 33.976 kb on + strand, within HSERO_RS00110 at 33.976 kb on + strand, within HSERO_RS00110 at 33.990 kb on + strand, within HSERO_RS00110 at 33.990 kb on + strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 34.043 kb on + strand, within HSERO_RS00110 at 34.046 kb on - strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.054 kb on + strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.059 kb on + strand, within HSERO_RS00110 at 34.062 kb on - strand, within HSERO_RS00110 at 34.067 kb on - strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.124 kb on - strand, within HSERO_RS00110 at 34.136 kb on - strand, within HSERO_RS00110 at 34.137 kb on + strand, within HSERO_RS00110 at 34.158 kb on - strand, within HSERO_RS00110 at 34.158 kb on - strand, within HSERO_RS00110 at 34.162 kb on - strand, within HSERO_RS00110 at 34.189 kb on + strand, within HSERO_RS00110 at 34.197 kb on - strand, within HSERO_RS00110 at 34.202 kb on - strand, within HSERO_RS00110 at 34.213 kb on - strand, within HSERO_RS00110 at 34.515 kb on + strand, within HSERO_RS00110 at 34.531 kb on + strand, within HSERO_RS00110 at 34.531 kb on + strand at 34.573 kb on - strand at 34.729 kb on - strand at 34.736 kb on - strand at 34.736 kb on - strand at 34.780 kb on + strand at 34.793 kb on - strand at 34.810 kb on + strand at 34.836 kb on + strand at 34.837 kb on - strand at 34.842 kb on - strand at 34.842 kb on - strand at 34.842 kb on - strand at 34.864 kb on - strand at 34.947 kb on + strand at 34.947 kb on + strand at 34.960 kb on - strand at 34.980 kb on - strand at 34.980 kb on - strand at 34.983 kb on + strand at 34.991 kb on - strand at 34.993 kb on + strand, within HSERO_RS00115 at 34.999 kb on - strand, within HSERO_RS00115 at 35.046 kb on - strand, within HSERO_RS00115 at 35.071 kb on + strand, within HSERO_RS00115 at 35.071 kb on + strand, within HSERO_RS00115 at 35.112 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.132 kb on + strand, within HSERO_RS00115 at 35.132 kb on + strand, within HSERO_RS00115 at 35.140 kb on - strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.200 kb on + strand, within HSERO_RS00115 at 35.209 kb on - strand, within HSERO_RS00115 at 35.238 kb on + strand, within HSERO_RS00115 at 35.256 kb on + strand, within HSERO_RS00115 at 35.263 kb on + strand, within HSERO_RS00115 at 35.270 kb on + strand, within HSERO_RS00115 at 35.271 kb on - strand, within HSERO_RS00115 at 35.278 kb on - strand, within HSERO_RS00115 at 35.283 kb on + strand, within HSERO_RS00115 at 35.285 kb on + strand, within HSERO_RS00115 at 35.295 kb on - strand, within HSERO_RS00115 at 35.312 kb on - strand, within HSERO_RS00115 at 35.317 kb on - strand, within HSERO_RS00115 at 35.345 kb on - strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.352 kb on + strand, within HSERO_RS00115 at 35.355 kb on - strand, within HSERO_RS00115 at 35.393 kb on + strand, within HSERO_RS00115 at 35.541 kb on + strand, within HSERO_RS00115 at 35.549 kb on - strand, within HSERO_RS00115 at 35.565 kb on + strand, within HSERO_RS00115 at 35.579 kb on + strand, within HSERO_RS00115 at 35.587 kb on - strand, within HSERO_RS00115 at 35.592 kb on + strand, within HSERO_RS00115 at 35.598 kb on + strand, within HSERO_RS00115 at 35.659 kb on - strand, within HSERO_RS00115 at 35.667 kb on + strand, within HSERO_RS00115 at 35.679 kb on - strand, within HSERO_RS00115 at 35.783 kb on + strand, within HSERO_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.04 mg/ml remove 32,802 - HSERO_RS00105 0.45 -1.1 33,014 + HSERO_RS00105 0.57 +0.3 33,014 + HSERO_RS00105 0.57 -0.2 33,014 + HSERO_RS00105 0.57 +0.2 33,014 + HSERO_RS00105 0.57 -1.4 33,022 - HSERO_RS00105 0.58 -0.2 33,022 - HSERO_RS00105 0.58 -1.3 33,037 - HSERO_RS00105 0.59 +1.0 33,078 - HSERO_RS00105 0.61 -1.2 33,173 + HSERO_RS00105 0.66 +0.0 33,174 + HSERO_RS00105 0.67 +0.2 33,248 - HSERO_RS00105 0.71 +0.3 33,290 + HSERO_RS00105 0.73 +0.6 33,321 - HSERO_RS00105 0.75 -0.2 33,335 + HSERO_RS00105 0.76 -0.1 33,335 + HSERO_RS00105 0.76 -0.5 33,349 - HSERO_RS00105 0.77 -0.5 33,370 + HSERO_RS00105 0.78 -0.6 33,521 + +1.9 33,531 + HSERO_RS00105 0.87 +1.7 33,586 - +0.1 33,680 + -0.6 33,683 + +0.1 33,735 + +0.2 33,737 + +0.4 33,743 - -0.4 33,743 - -0.4 33,821 + +0.1 33,821 + +0.4 33,821 + +0.3 33,829 - +0.0 33,849 + -0.1 33,857 - HSERO_RS00110 0.11 -0.2 33,857 - HSERO_RS00110 0.11 -0.3 33,929 + HSERO_RS00110 0.17 +0.0 33,929 + +1.3 33,937 - HSERO_RS00110 0.18 -0.4 33,976 + HSERO_RS00110 0.22 -0.1 33,976 + HSERO_RS00110 0.22 -1.0 33,990 + HSERO_RS00110 0.23 -0.2 33,990 + HSERO_RS00110 0.23 -1.2 33,998 - HSERO_RS00110 0.24 -0.3 33,998 - HSERO_RS00110 0.24 +1.3 33,998 - HSERO_RS00110 0.24 -2.7 33,998 - HSERO_RS00110 0.24 -0.2 34,043 + HSERO_RS00110 0.28 +0.2 34,046 - HSERO_RS00110 0.28 -0.7 34,048 + HSERO_RS00110 0.28 +0.6 34,048 + -0.3 34,048 + HSERO_RS00110 0.28 -1.3 34,048 + HSERO_RS00110 0.28 +0.8 34,048 + HSERO_RS00110 0.28 -2.3 34,048 + HSERO_RS00110 0.28 -0.8 34,048 + HSERO_RS00110 0.28 +0.1 34,048 + HSERO_RS00110 0.28 -1.3 34,048 + HSERO_RS00110 0.28 +0.1 34,048 + HSERO_RS00110 0.28 +0.1 34,054 + HSERO_RS00110 0.29 -0.3 34,056 - HSERO_RS00110 0.29 +0.2 34,056 - HSERO_RS00110 0.29 -0.1 34,056 - HSERO_RS00110 0.29 -0.7 34,056 - HSERO_RS00110 0.29 -0.6 34,056 - HSERO_RS00110 0.29 -0.5 34,056 - HSERO_RS00110 0.29 +0.3 34,056 - HSERO_RS00110 0.29 -0.1 34,056 - HSERO_RS00110 0.29 -0.7 34,059 + HSERO_RS00110 0.29 -1.0 34,062 - HSERO_RS00110 0.30 -0.4 34,067 - HSERO_RS00110 0.30 +0.2 34,116 + HSERO_RS00110 0.35 -0.2 34,116 + HSERO_RS00110 0.35 +0.4 34,116 + HSERO_RS00110 0.35 +0.2 34,124 - HSERO_RS00110 0.35 +0.1 34,136 - HSERO_RS00110 0.37 -0.2 34,137 + HSERO_RS00110 0.37 -0.0 34,158 - HSERO_RS00110 0.39 +0.7 34,158 - HSERO_RS00110 0.39 +1.6 34,162 - HSERO_RS00110 0.39 -0.3 34,189 + HSERO_RS00110 0.42 -3.0 34,197 - HSERO_RS00110 0.42 -0.6 34,202 - HSERO_RS00110 0.43 -1.0 34,213 - HSERO_RS00110 0.44 +0.0 34,515 + HSERO_RS00110 0.72 -1.7 34,531 + HSERO_RS00110 0.73 +0.8 34,531 + +1.6 34,573 - +1.3 34,729 - +2.9 34,736 - -0.2 34,736 - -1.1 34,780 + -0.7 34,793 - -0.7 34,810 + -2.7 34,836 + +0.1 34,837 - -1.4 34,842 - -0.2 34,842 - +0.4 34,842 - -0.6 34,864 - -1.9 34,947 + -0.9 34,947 + -1.9 34,960 - -0.2 34,980 - +0.0 34,980 - -0.5 34,983 + -1.3 34,991 - -0.5 34,993 + HSERO_RS00115 0.10 -0.1 34,999 - HSERO_RS00115 0.11 -0.6 35,046 - HSERO_RS00115 0.15 -1.0 35,071 + HSERO_RS00115 0.17 +0.2 35,071 + HSERO_RS00115 0.17 -0.5 35,112 + HSERO_RS00115 0.21 -0.1 35,113 + HSERO_RS00115 0.21 -0.6 35,113 + HSERO_RS00115 0.21 +0.4 35,113 + HSERO_RS00115 0.21 -0.6 35,126 - HSERO_RS00115 0.23 +0.2 35,126 - HSERO_RS00115 0.23 +0.6 35,126 - HSERO_RS00115 0.23 -0.6 35,132 + HSERO_RS00115 0.23 -0.5 35,132 + HSERO_RS00115 0.23 -0.8 35,140 - HSERO_RS00115 0.24 -0.1 35,190 + HSERO_RS00115 0.29 -0.2 35,190 + HSERO_RS00115 0.29 +1.5 35,190 + HSERO_RS00115 0.29 -0.4 35,190 + HSERO_RS00115 0.29 -0.3 35,190 + HSERO_RS00115 0.29 -0.3 35,198 - HSERO_RS00115 0.29 -0.8 35,198 - HSERO_RS00115 0.29 -0.5 35,198 - HSERO_RS00115 0.29 -1.0 35,198 - HSERO_RS00115 0.29 -0.2 35,200 + HSERO_RS00115 0.29 -0.6 35,209 - HSERO_RS00115 0.30 -1.9 35,238 + HSERO_RS00115 0.33 -0.2 35,256 + HSERO_RS00115 0.35 -0.4 35,263 + HSERO_RS00115 0.35 +2.3 35,270 + HSERO_RS00115 0.36 -0.1 35,271 - HSERO_RS00115 0.36 -1.0 35,278 - HSERO_RS00115 0.37 -0.8 35,283 + HSERO_RS00115 0.37 -0.8 35,285 + HSERO_RS00115 0.37 -0.4 35,295 - HSERO_RS00115 0.38 -0.5 35,312 - HSERO_RS00115 0.40 -1.8 35,317 - HSERO_RS00115 0.40 +0.2 35,345 - HSERO_RS00115 0.43 -1.0 35,347 + HSERO_RS00115 0.43 +0.5 35,347 + HSERO_RS00115 0.43 -0.1 35,347 + HSERO_RS00115 0.43 +0.5 35,352 + HSERO_RS00115 0.44 -0.9 35,355 - HSERO_RS00115 0.44 +0.3 35,393 + HSERO_RS00115 0.48 -1.0 35,541 + HSERO_RS00115 0.61 -1.3 35,549 - HSERO_RS00115 0.62 -1.1 35,565 + HSERO_RS00115 0.64 -1.4 35,579 + HSERO_RS00115 0.65 -1.1 35,587 - HSERO_RS00115 0.66 +2.0 35,592 + HSERO_RS00115 0.66 +0.2 35,598 + HSERO_RS00115 0.67 -0.3 35,659 - HSERO_RS00115 0.72 -2.5 35,667 + HSERO_RS00115 0.73 +1.2 35,679 - HSERO_RS00115 0.74 -0.0 35,783 + HSERO_RS00115 0.84 -1.0
Or see this region's nucleotide sequence