Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23405

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23400 and BPHYT_RS23405 are separated by 177 nucleotidesBPHYT_RS23405 and BPHYT_RS23410 are separated by 964 nucleotides BPHYT_RS23400: BPHYT_RS23400 - GntR family transcriptional regulator, at 812,056 to 812,754 _RS23400 BPHYT_RS23405: BPHYT_RS23405 - glucosamine--fructose-6-phosphate aminotransferase, at 812,932 to 814,749 _RS23405 BPHYT_RS23410: BPHYT_RS23410 - hypothetical protein, at 815,714 to 816,442 _RS23410 Position (kb) 812 813 814 815Strain fitness (log2 ratio) -1 0 1at 811.960 kb on + strandat 812.026 kb on + strandat 812.774 kb on - strandat 814.621 kb on + strandat 814.910 kb on + strandat 814.911 kb on - strandat 815.222 kb on + strandat 815.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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811,960 + +0.2
812,026 + +0.1
812,774 - -0.0
814,621 + +0.9
814,910 + +0.3
814,911 - -0.5
815,222 + -1.0
815,409 - +0.3

Or see this region's nucleotide sequence