Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18565

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18560 and BPHYT_RS18565 are separated by 69 nucleotidesBPHYT_RS18565 and BPHYT_RS18570 are separated by 126 nucleotides BPHYT_RS18560: BPHYT_RS18560 - glucosamine--fructose-6-phosphate aminotransferase, at 4,174,924 to 4,176,741 _RS18560 BPHYT_RS18565: BPHYT_RS18565 - bifunctional protein GlmU, at 4,176,811 to 4,178,172 _RS18565 BPHYT_RS18570: BPHYT_RS18570 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 4,178,299 to 4,179,309 _RS18570 Position (kb) 4176 4177 4178 4179Strain fitness (log2 ratio) -2 -1 0 1at 4176.765 kb on - strandat 4176.810 kb on - strandat 4178.503 kb on - strand, within BPHYT_RS18570at 4178.630 kb on + strand, within BPHYT_RS18570at 4178.631 kb on - strand, within BPHYT_RS18570at 4178.657 kb on + strand, within BPHYT_RS18570at 4178.679 kb on + strand, within BPHYT_RS18570at 4178.680 kb on - strand, within BPHYT_RS18570at 4178.735 kb on + strand, within BPHYT_RS18570at 4178.735 kb on + strand, within BPHYT_RS18570at 4178.735 kb on + strand, within BPHYT_RS18570at 4178.736 kb on - strand, within BPHYT_RS18570at 4178.904 kb on - strand, within BPHYT_RS18570at 4178.904 kb on - strand, within BPHYT_RS18570at 4179.068 kb on + strand, within BPHYT_RS18570at 4179.068 kb on + strand, within BPHYT_RS18570at 4179.069 kb on - strand, within BPHYT_RS18570at 4179.069 kb on - strand, within BPHYT_RS18570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
4,176,765 - +0.3
4,176,810 - +1.6
4,178,503 - BPHYT_RS18570 0.20 +0.1
4,178,630 + BPHYT_RS18570 0.33 +0.1
4,178,631 - BPHYT_RS18570 0.33 +0.2
4,178,657 + BPHYT_RS18570 0.35 -0.6
4,178,679 + BPHYT_RS18570 0.38 +0.4
4,178,680 - BPHYT_RS18570 0.38 -1.9
4,178,735 + BPHYT_RS18570 0.43 -0.1
4,178,735 + BPHYT_RS18570 0.43 -0.0
4,178,735 + BPHYT_RS18570 0.43 +0.3
4,178,736 - BPHYT_RS18570 0.43 +0.3
4,178,904 - BPHYT_RS18570 0.60 -0.6
4,178,904 - BPHYT_RS18570 0.60 -0.0
4,179,068 + BPHYT_RS18570 0.76 +0.3
4,179,068 + BPHYT_RS18570 0.76 +0.7
4,179,069 - BPHYT_RS18570 0.76 -0.0
4,179,069 - BPHYT_RS18570 0.76 +0.3

Or see this region's nucleotide sequence