Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03105 and BPHYT_RS03110 are separated by 31 nucleotides BPHYT_RS03110 and BPHYT_RS03115 are separated by 125 nucleotides BPHYT_RS03115 and BPHYT_RS03120 are separated by 159 nucleotides
BPHYT_RS03105: BPHYT_RS03105 - DSBA oxidoreductase, at 694,600 to 696,195
_RS03105
BPHYT_RS03110: BPHYT_RS03110 - MarR family transcriptional regulator, at 696,227 to 696,736
_RS03110
BPHYT_RS03115: BPHYT_RS03115 - amino acid deaminase, at 696,862 to 698,139
_RS03115
BPHYT_RS03120: BPHYT_RS03120 - transcriptional regulator, at 698,299 to 699,189
_RS03120
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.893 kb on - strand, within BPHYT_RS03105 at 695.893 kb on - strand, within BPHYT_RS03105 at 695.896 kb on + strand, within BPHYT_RS03105 at 695.896 kb on + strand, within BPHYT_RS03105 at 695.897 kb on - strand, within BPHYT_RS03105 at 695.997 kb on + strand, within BPHYT_RS03105 at 696.529 kb on + strand at 696.530 kb on - strand, within BPHYT_RS03110 at 696.530 kb on - strand, within BPHYT_RS03110 at 696.897 kb on - strand at 697.013 kb on + strand, within BPHYT_RS03115 at 697.014 kb on - strand, within BPHYT_RS03115 at 697.014 kb on - strand, within BPHYT_RS03115 at 697.095 kb on - strand, within BPHYT_RS03115 at 697.148 kb on - strand, within BPHYT_RS03115 at 697.148 kb on - strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115 at 697.280 kb on + strand, within BPHYT_RS03115 at 697.304 kb on + strand, within BPHYT_RS03115 at 697.331 kb on - strand, within BPHYT_RS03115 at 697.331 kb on - strand, within BPHYT_RS03115 at 697.379 kb on + strand, within BPHYT_RS03115 at 697.379 kb on + strand, within BPHYT_RS03115 at 697.515 kb on - strand, within BPHYT_RS03115 at 697.515 kb on - strand, within BPHYT_RS03115 at 697.515 kb on - strand, within BPHYT_RS03115 at 697.795 kb on - strand, within BPHYT_RS03115 at 698.097 kb on + strand at 698.100 kb on - strand at 698.230 kb on - strand at 698.290 kb on + strand at 698.306 kb on + strand at 698.307 kb on - strand at 698.498 kb on + strand, within BPHYT_RS03120 at 698.716 kb on + strand, within BPHYT_RS03120 at 698.717 kb on - strand, within BPHYT_RS03120 at 698.803 kb on + strand, within BPHYT_RS03120 at 698.874 kb on + strand, within BPHYT_RS03120 at 699.026 kb on - strand, within BPHYT_RS03120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 695,892 + BPHYT_RS03105 0.81 +0.3 695,892 + BPHYT_RS03105 0.81 -0.4 695,892 + BPHYT_RS03105 0.81 -0.3 695,893 - BPHYT_RS03105 0.81 +0.0 695,893 - BPHYT_RS03105 0.81 -0.3 695,896 + BPHYT_RS03105 0.81 -0.6 695,896 + BPHYT_RS03105 0.81 +0.1 695,897 - BPHYT_RS03105 0.81 +0.0 695,997 + BPHYT_RS03105 0.88 -0.1 696,529 + +1.2 696,530 - BPHYT_RS03110 0.59 -1.0 696,530 - BPHYT_RS03110 0.59 -0.6 696,897 - -0.7 697,013 + BPHYT_RS03115 0.12 -1.2 697,014 - BPHYT_RS03115 0.12 -3.9 697,014 - BPHYT_RS03115 0.12 -1.5 697,095 - BPHYT_RS03115 0.18 -0.6 697,148 - BPHYT_RS03115 0.22 -1.4 697,148 - BPHYT_RS03115 0.22 -1.0 697,190 + BPHYT_RS03115 0.26 +0.5 697,190 + BPHYT_RS03115 0.26 -0.8 697,190 + BPHYT_RS03115 0.26 -0.0 697,191 - BPHYT_RS03115 0.26 -1.5 697,191 - BPHYT_RS03115 0.26 -1.2 697,191 - BPHYT_RS03115 0.26 -1.5 697,280 + BPHYT_RS03115 0.33 -1.4 697,304 + BPHYT_RS03115 0.35 -1.7 697,331 - BPHYT_RS03115 0.37 -0.4 697,331 - BPHYT_RS03115 0.37 -0.9 697,379 + BPHYT_RS03115 0.40 -4.0 697,379 + BPHYT_RS03115 0.40 -1.3 697,515 - BPHYT_RS03115 0.51 -1.1 697,515 - BPHYT_RS03115 0.51 -0.4 697,515 - BPHYT_RS03115 0.51 -0.9 697,795 - BPHYT_RS03115 0.73 -1.0 698,097 + +0.3 698,100 - -0.6 698,230 - +0.2 698,290 + -0.3 698,306 + +0.6 698,307 - -0.2 698,498 + BPHYT_RS03120 0.22 -0.0 698,716 + BPHYT_RS03120 0.47 +0.0 698,717 - BPHYT_RS03120 0.47 +0.1 698,803 + BPHYT_RS03120 0.57 +0.6 698,874 + BPHYT_RS03120 0.65 +0.1 699,026 - BPHYT_RS03120 0.82 -0.5
Or see this region's nucleotide sequence