Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13655

Experiment: CDM1 without Nicotinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13645 and BBR_RS13650 are separated by 33 nucleotidesBBR_RS13650 and BBR_RS13655 are separated by 124 nucleotidesBBR_RS13655 and BBR_RS13660 are separated by 207 nucleotides BBR_RS13645: BBR_RS13645 - guanylate kinase, at 835,482 to 836,072 _RS13645 BBR_RS13650: BBR_RS13650 - 3'-5' exonuclease, at 836,106 to 836,813 _RS13650 BBR_RS13655: BBR_RS13655 - hypothetical protein, at 836,938 to 837,369 _RS13655 BBR_RS13660: BBR_RS13660 - GTP-binding protein, at 837,577 to 839,763 _RS13660 Position (kb) 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1at 836.057 kb on + strandat 836.109 kb on + strandat 836.117 kb on - strandat 836.130 kb on + strandat 836.148 kb on + strandat 836.148 kb on + strandat 836.156 kb on - strandat 836.156 kb on - strandat 836.165 kb on + strandat 836.165 kb on + strandat 836.243 kb on - strand, within BBR_RS13650at 836.270 kb on - strand, within BBR_RS13650at 836.272 kb on - strand, within BBR_RS13650at 836.276 kb on + strand, within BBR_RS13650at 836.324 kb on + strand, within BBR_RS13650at 836.324 kb on + strand, within BBR_RS13650at 836.339 kb on - strand, within BBR_RS13650at 836.409 kb on - strand, within BBR_RS13650at 836.466 kb on - strand, within BBR_RS13650at 836.521 kb on + strand, within BBR_RS13650at 836.522 kb on + strand, within BBR_RS13650at 836.522 kb on + strand, within BBR_RS13650at 836.639 kb on + strand, within BBR_RS13650at 836.661 kb on - strand, within BBR_RS13650at 836.710 kb on + strand, within BBR_RS13650at 836.869 kb on - strandat 836.898 kb on + strandat 836.898 kb on + strandat 836.898 kb on + strandat 836.941 kb on + strandat 836.951 kb on - strandat 836.975 kb on - strandat 837.002 kb on - strand, within BBR_RS13655at 837.045 kb on + strand, within BBR_RS13655at 837.053 kb on - strand, within BBR_RS13655at 837.053 kb on - strand, within BBR_RS13655at 837.082 kb on + strand, within BBR_RS13655at 837.110 kb on - strand, within BBR_RS13655at 837.148 kb on - strand, within BBR_RS13655at 837.167 kb on - strand, within BBR_RS13655at 837.172 kb on - strand, within BBR_RS13655at 837.200 kb on + strand, within BBR_RS13655at 837.226 kb on + strand, within BBR_RS13655at 837.226 kb on + strand, within BBR_RS13655at 837.240 kb on - strand, within BBR_RS13655at 837.242 kb on + strand, within BBR_RS13655at 837.242 kb on + strand, within BBR_RS13655at 837.242 kb on + strand, within BBR_RS13655at 837.242 kb on + strand, within BBR_RS13655at 837.247 kb on + strand, within BBR_RS13655at 837.247 kb on + strand, within BBR_RS13655at 837.260 kb on - strand, within BBR_RS13655at 837.266 kb on + strand, within BBR_RS13655at 837.271 kb on + strand, within BBR_RS13655at 837.293 kb on + strand, within BBR_RS13655at 837.293 kb on + strand, within BBR_RS13655at 837.301 kb on - strand, within BBR_RS13655at 837.302 kb on + strand, within BBR_RS13655at 837.318 kb on - strand, within BBR_RS13655at 837.325 kb on - strand, within BBR_RS13655at 837.353 kb on - strandat 837.353 kb on - strandat 837.489 kb on + strandat 837.498 kb on - strandat 837.569 kb on + strandat 837.569 kb on + strandat 837.627 kb on - strandat 837.633 kb on + strandat 837.633 kb on + strandat 837.633 kb on + strandat 837.641 kb on - strandat 837.658 kb on + strandat 837.680 kb on + strandat 837.680 kb on + strandat 837.685 kb on + strandat 837.688 kb on - strandat 837.691 kb on + strandat 837.727 kb on + strandat 837.800 kb on + strand, within BBR_RS13660at 837.897 kb on - strand, within BBR_RS13660at 837.907 kb on + strand, within BBR_RS13660at 837.994 kb on + strand, within BBR_RS13660at 838.030 kb on + strand, within BBR_RS13660at 838.041 kb on + strand, within BBR_RS13660at 838.074 kb on + strand, within BBR_RS13660at 838.079 kb on + strand, within BBR_RS13660at 838.079 kb on + strand, within BBR_RS13660at 838.087 kb on - strand, within BBR_RS13660at 838.111 kb on + strand, within BBR_RS13660at 838.117 kb on - strand, within BBR_RS13660at 838.121 kb on - strand, within BBR_RS13660at 838.136 kb on + strand, within BBR_RS13660at 838.286 kb on + strand, within BBR_RS13660at 838.294 kb on - strand, within BBR_RS13660at 838.340 kb on + strand, within BBR_RS13660at 838.340 kb on + strand, within BBR_RS13660at 838.358 kb on + strand, within BBR_RS13660

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Nicotinate
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836,057 + +0.6
836,109 + -0.6
836,117 - -1.2
836,130 + +0.5
836,148 + +0.1
836,148 + -0.4
836,156 - -0.2
836,156 - -2.2
836,165 + +0.1
836,165 + -0.7
836,243 - BBR_RS13650 0.19 +0.2
836,270 - BBR_RS13650 0.23 -0.2
836,272 - BBR_RS13650 0.23 -1.7
836,276 + BBR_RS13650 0.24 +0.1
836,324 + BBR_RS13650 0.31 -0.0
836,324 + BBR_RS13650 0.31 -2.1
836,339 - BBR_RS13650 0.33 +1.0
836,409 - BBR_RS13650 0.43 -0.6
836,466 - BBR_RS13650 0.51 +1.2
836,521 + BBR_RS13650 0.59 +0.8
836,522 + BBR_RS13650 0.59 -0.4
836,522 + BBR_RS13650 0.59 -0.6
836,639 + BBR_RS13650 0.75 -0.5
836,661 - BBR_RS13650 0.78 -0.2
836,710 + BBR_RS13650 0.85 +0.9
836,869 - -0.4
836,898 + -2.0
836,898 + +1.0
836,898 + -1.3
836,941 + -1.0
836,951 - +0.7
836,975 - -0.0
837,002 - BBR_RS13655 0.15 +0.2
837,045 + BBR_RS13655 0.25 +0.4
837,053 - BBR_RS13655 0.27 -1.9
837,053 - BBR_RS13655 0.27 -0.3
837,082 + BBR_RS13655 0.33 -1.3
837,110 - BBR_RS13655 0.40 -1.0
837,148 - BBR_RS13655 0.49 -0.8
837,167 - BBR_RS13655 0.53 -1.2
837,172 - BBR_RS13655 0.54 -1.0
837,200 + BBR_RS13655 0.61 -1.3
837,226 + BBR_RS13655 0.67 -2.4
837,226 + BBR_RS13655 0.67 -1.0
837,240 - BBR_RS13655 0.70 -1.1
837,242 + BBR_RS13655 0.70 -1.3
837,242 + BBR_RS13655 0.70 -1.1
837,242 + BBR_RS13655 0.70 +0.1
837,242 + BBR_RS13655 0.70 -1.2
837,247 + BBR_RS13655 0.72 -0.8
837,247 + BBR_RS13655 0.72 -0.5
837,260 - BBR_RS13655 0.75 -0.6
837,266 + BBR_RS13655 0.76 -0.8
837,271 + BBR_RS13655 0.77 -1.0
837,293 + BBR_RS13655 0.82 -0.3
837,293 + BBR_RS13655 0.82 +0.5
837,301 - BBR_RS13655 0.84 -1.2
837,302 + BBR_RS13655 0.84 -1.1
837,318 - BBR_RS13655 0.88 -0.6
837,325 - BBR_RS13655 0.90 -0.6
837,353 - +0.4
837,353 - -0.8
837,489 + -0.3
837,498 - -2.1
837,569 + -0.6
837,569 + -2.0
837,627 - -1.8
837,633 + -0.6
837,633 + -1.7
837,633 + -1.1
837,641 - -3.4
837,658 + +0.0
837,680 + -2.0
837,680 + +0.0
837,685 + -1.9
837,688 - -3.0
837,691 + -0.6
837,727 + -0.6
837,800 + BBR_RS13660 0.10 -0.3
837,897 - BBR_RS13660 0.15 -2.0
837,907 + BBR_RS13660 0.15 -1.0
837,994 + BBR_RS13660 0.19 -0.2
838,030 + BBR_RS13660 0.21 -1.9
838,041 + BBR_RS13660 0.21 +0.6
838,074 + BBR_RS13660 0.23 +0.2
838,079 + BBR_RS13660 0.23 -0.9
838,079 + BBR_RS13660 0.23 -1.4
838,087 - BBR_RS13660 0.23 -1.1
838,111 + BBR_RS13660 0.24 -2.6
838,117 - BBR_RS13660 0.25 -2.4
838,121 - BBR_RS13660 0.25 -1.4
838,136 + BBR_RS13660 0.26 -3.0
838,286 + BBR_RS13660 0.32 +0.0
838,294 - BBR_RS13660 0.33 -2.3
838,340 + BBR_RS13660 0.35 -2.5
838,340 + BBR_RS13660 0.35 -0.6
838,358 + BBR_RS13660 0.36 +0.3

Or see this region's nucleotide sequence