Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22570 and RR42_RS22575 are separated by 284 nucleotides RR42_RS22575 and RR42_RS22580 are separated by 82 nucleotides RR42_RS22580 and RR42_RS22585 are separated by 179 nucleotides
RR42_RS22570: RR42_RS22570 - SAM-dependent methyltransferase, at 399,827 to 400,555
_RS22570
RR42_RS22575: RR42_RS22575 - hypothetical protein, at 400,840 to 401,649
_RS22575
RR42_RS22580: RR42_RS22580 - hypothetical protein, at 401,732 to 402,106
_RS22580
RR42_RS22585: RR42_RS22585 - MarR family transcriptional regulator, at 402,286 to 402,783
_RS22585
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.926 kb on + strand, within RR42_RS22570 at 400.326 kb on - strand, within RR42_RS22570 at 400.612 kb on - strand at 400.621 kb on - strand at 400.685 kb on + strand at 400.686 kb on - strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.845 kb on - strand at 401.001 kb on + strand, within RR42_RS22575 at 401.416 kb on - strand, within RR42_RS22575 at 401.861 kb on + strand, within RR42_RS22580 at 401.861 kb on + strand, within RR42_RS22580 at 401.861 kb on + strand, within RR42_RS22580 at 401.862 kb on - strand, within RR42_RS22580 at 401.972 kb on + strand, within RR42_RS22580 at 401.973 kb on - strand, within RR42_RS22580 at 402.049 kb on + strand, within RR42_RS22580 at 402.170 kb on + strand at 402.170 kb on + strand at 402.170 kb on + strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.211 kb on - strand at 402.220 kb on + strand at 402.235 kb on + strand at 402.389 kb on - strand, within RR42_RS22585 at 402.461 kb on - strand, within RR42_RS22585
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 399,926 + RR42_RS22570 0.14 +0.2 400,326 - RR42_RS22570 0.68 +0.1 400,612 - +0.1 400,621 - -0.2 400,685 + +2.0 400,686 - -2.2 400,844 + +0.7 400,844 + -0.1 400,845 - +0.0 401,001 + RR42_RS22575 0.20 -1.7 401,416 - RR42_RS22575 0.71 -0.4 401,861 + RR42_RS22580 0.34 +1.0 401,861 + RR42_RS22580 0.34 -0.5 401,861 + RR42_RS22580 0.34 +0.8 401,862 - RR42_RS22580 0.35 -0.4 401,972 + RR42_RS22580 0.64 +1.5 401,973 - RR42_RS22580 0.64 -1.0 402,049 + RR42_RS22580 0.85 +0.1 402,170 + +0.9 402,170 + -0.7 402,170 + -0.1 402,171 - -0.3 402,171 - -0.1 402,171 - -1.8 402,211 - +0.1 402,220 + -0.1 402,235 + -0.7 402,389 - RR42_RS22585 0.21 -0.4 402,461 - RR42_RS22585 0.35 -0.5
Or see this region's nucleotide sequence