Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17275

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17270 and RR42_RS17275 are separated by 175 nucleotidesRR42_RS17275 and RR42_RS17280 are separated by 227 nucleotides RR42_RS17270: RR42_RS17270 - molecular chaperone DnaJ, at 3,738,499 to 3,739,650 _RS17270 RR42_RS17275: RR42_RS17275 - molecular chaperone DnaK, at 3,739,826 to 3,741,790 _RS17275 RR42_RS17280: RR42_RS17280 - ATP--cobalamin adenosyltransferase, at 3,742,018 to 3,742,563 _RS17280 Position (kb) 3739 3740 3741 3742Strain fitness (log2 ratio) -1 0 1at 3739.828 kb on - strandat 3739.828 kb on - strandat 3741.956 kb on + strandat 3741.956 kb on + strandat 3742.036 kb on + strandat 3742.036 kb on + strandat 3742.081 kb on + strand, within RR42_RS17280at 3742.081 kb on + strand, within RR42_RS17280at 3742.113 kb on - strand, within RR42_RS17280at 3742.268 kb on + strand, within RR42_RS17280at 3742.268 kb on + strand, within RR42_RS17280at 3742.268 kb on + strand, within RR42_RS17280at 3742.268 kb on + strand, within RR42_RS17280at 3742.268 kb on + strand, within RR42_RS17280at 3742.269 kb on - strand, within RR42_RS17280at 3742.269 kb on - strand, within RR42_RS17280at 3742.269 kb on - strand, within RR42_RS17280at 3742.269 kb on - strand, within RR42_RS17280at 3742.323 kb on - strand, within RR42_RS17280at 3742.323 kb on - strand, within RR42_RS17280at 3742.323 kb on - strand, within RR42_RS17280at 3742.323 kb on - strand, within RR42_RS17280at 3742.594 kb on + strandat 3742.595 kb on - strandat 3742.697 kb on - strandat 3742.718 kb on + strandat 3742.718 kb on + strandat 3742.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,739,828 - +0.5
3,739,828 - +0.6
3,741,956 + +1.1
3,741,956 + +0.1
3,742,036 + +1.2
3,742,036 + -0.5
3,742,081 + RR42_RS17280 0.12 +1.0
3,742,081 + RR42_RS17280 0.12 +0.5
3,742,113 - RR42_RS17280 0.17 +0.6
3,742,268 + RR42_RS17280 0.46 -0.3
3,742,268 + RR42_RS17280 0.46 +0.1
3,742,268 + RR42_RS17280 0.46 -0.2
3,742,268 + RR42_RS17280 0.46 +0.7
3,742,268 + RR42_RS17280 0.46 +0.1
3,742,269 - RR42_RS17280 0.46 -0.2
3,742,269 - RR42_RS17280 0.46 -0.2
3,742,269 - RR42_RS17280 0.46 -0.7
3,742,269 - RR42_RS17280 0.46 +0.9
3,742,323 - RR42_RS17280 0.56 -0.0
3,742,323 - RR42_RS17280 0.56 +0.3
3,742,323 - RR42_RS17280 0.56 -0.1
3,742,323 - RR42_RS17280 0.56 -0.5
3,742,594 + -0.0
3,742,595 - +0.5
3,742,697 - -0.0
3,742,718 + +0.3
3,742,718 + +0.2
3,742,719 - -0.4

Or see this region's nucleotide sequence