Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16505 and RR42_RS16510 are separated by 242 nucleotides RR42_RS16510 and RR42_RS16515 are separated by 403 nucleotides RR42_RS16515 and RR42_RS16520 are separated by 206 nucleotides RR42_RS16520 and RR42_RS16525 overlap by 1 nucleotides
RR42_RS16505: RR42_RS16505 - adenylate cyclase, at 3,576,280 to 3,577,935
_RS16505
RR42_RS16510: RR42_RS16510 - hypothetical protein, at 3,578,178 to 3,578,396
_RS16510
RR42_RS16515: RR42_RS16515 - hypothetical protein, at 3,578,800 to 3,579,102
_RS16515
RR42_RS16520: RR42_RS16520 - RNA polymerase sigma factor, at 3,579,309 to 3,579,848
_RS16520
RR42_RS16525: RR42_RS16525 - anti-sigma factor, at 3,579,848 to 3,580,633
_RS16525
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-1
0
1
2 at 3577.854 kb on + strand at 3577.854 kb on + strand at 3577.854 kb on + strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.897 kb on - strand at 3577.914 kb on + strand at 3578.180 kb on - strand at 3578.297 kb on + strand, within RR42_RS16510 at 3578.410 kb on + strand at 3578.415 kb on + strand at 3578.527 kb on - strand at 3578.702 kb on - strand at 3578.793 kb on + strand at 3578.794 kb on - strand at 3579.349 kb on + strand at 3579.350 kb on - strand at 3579.360 kb on - strand at 3579.436 kb on - strand, within RR42_RS16520 at 3579.436 kb on - strand, within RR42_RS16520 at 3579.520 kb on - strand, within RR42_RS16520 at 3579.735 kb on + strand, within RR42_RS16520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,577,854 + +0.0 3,577,854 + -0.1 3,577,854 + -0.2 3,577,893 - -0.3 3,577,893 - +0.4 3,577,893 - +0.1 3,577,893 - +0.0 3,577,897 - +0.1 3,577,914 + -0.4 3,578,180 - -0.5 3,578,297 + RR42_RS16510 0.54 -0.7 3,578,410 + -0.3 3,578,415 + +1.9 3,578,527 - -0.4 3,578,702 - -0.1 3,578,793 + +0.4 3,578,794 - +0.2 3,579,349 + -1.3 3,579,350 - +0.6 3,579,360 - +0.5 3,579,436 - RR42_RS16520 0.24 -0.0 3,579,436 - RR42_RS16520 0.24 -0.3 3,579,520 - RR42_RS16520 0.39 -1.0 3,579,735 + RR42_RS16520 0.79 -0.4
Or see this region's nucleotide sequence