Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03490

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03485 and RR42_RS03490 are separated by 2 nucleotidesRR42_RS03490 and RR42_RS03495 are separated by 2 nucleotides RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581 _RS03485 RR42_RS03490: RR42_RS03490 - type VI secretion protein, at 774,584 to 775,624 _RS03490 RR42_RS03495: RR42_RS03495 - type VI secretion protein, at 775,627 to 777,507 _RS03495 Position (kb) 774 775 776Strain fitness (log2 ratio) -2 -1 0 1at 773.646 kb on + strandat 773.646 kb on + strandat 773.945 kb on - strand, within RR42_RS03485at 774.418 kb on + strand, within RR42_RS03485at 774.419 kb on - strand, within RR42_RS03485at 774.475 kb on + strand, within RR42_RS03485at 774.475 kb on + strand, within RR42_RS03485at 774.476 kb on - strand, within RR42_RS03485at 774.755 kb on + strand, within RR42_RS03490at 774.755 kb on + strand, within RR42_RS03490at 774.756 kb on - strand, within RR42_RS03490at 774.819 kb on + strand, within RR42_RS03490at 774.820 kb on - strand, within RR42_RS03490at 774.978 kb on + strand, within RR42_RS03490at 774.978 kb on + strand, within RR42_RS03490at 774.978 kb on + strand, within RR42_RS03490at 774.979 kb on - strand, within RR42_RS03490at 774.979 kb on - strand, within RR42_RS03490at 774.979 kb on - strand, within RR42_RS03490at 774.979 kb on - strand, within RR42_RS03490at 775.146 kb on + strand, within RR42_RS03490at 775.146 kb on + strand, within RR42_RS03490at 775.215 kb on + strand, within RR42_RS03490at 775.215 kb on + strand, within RR42_RS03490at 775.216 kb on - strand, within RR42_RS03490at 775.216 kb on - strand, within RR42_RS03490at 775.560 kb on + strandat 775.628 kb on + strandat 775.629 kb on - strandat 775.803 kb on + strandat 775.804 kb on - strandat 775.829 kb on + strand, within RR42_RS03495at 775.830 kb on - strand, within RR42_RS03495at 776.001 kb on - strand, within RR42_RS03495at 776.001 kb on - strand, within RR42_RS03495at 776.001 kb on - strand, within RR42_RS03495at 776.001 kb on - strand, within RR42_RS03495at 776.196 kb on - strand, within RR42_RS03495at 776.196 kb on - strand, within RR42_RS03495at 776.264 kb on + strand, within RR42_RS03495at 776.264 kb on + strand, within RR42_RS03495at 776.265 kb on - strand, within RR42_RS03495at 776.265 kb on - strand, within RR42_RS03495at 776.282 kb on + strand, within RR42_RS03495at 776.282 kb on + strand, within RR42_RS03495at 776.438 kb on + strand, within RR42_RS03495at 776.438 kb on + strand, within RR42_RS03495

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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773,646 + +0.3
773,646 + +0.6
773,945 - RR42_RS03485 0.39 -1.0
774,418 + RR42_RS03485 0.84 +0.1
774,419 - RR42_RS03485 0.84 +1.3
774,475 + RR42_RS03485 0.90 -0.2
774,475 + RR42_RS03485 0.90 -0.3
774,476 - RR42_RS03485 0.90 +0.0
774,755 + RR42_RS03490 0.16 -0.0
774,755 + RR42_RS03490 0.16 +0.3
774,756 - RR42_RS03490 0.17 -1.8
774,819 + RR42_RS03490 0.23 +0.4
774,820 - RR42_RS03490 0.23 -1.4
774,978 + RR42_RS03490 0.38 +0.0
774,978 + RR42_RS03490 0.38 +0.3
774,978 + RR42_RS03490 0.38 +0.5
774,979 - RR42_RS03490 0.38 -1.3
774,979 - RR42_RS03490 0.38 +1.0
774,979 - RR42_RS03490 0.38 +0.6
774,979 - RR42_RS03490 0.38 +0.1
775,146 + RR42_RS03490 0.54 +1.0
775,146 + RR42_RS03490 0.54 +0.7
775,215 + RR42_RS03490 0.61 +0.1
775,215 + RR42_RS03490 0.61 -0.0
775,216 - RR42_RS03490 0.61 +0.5
775,216 - RR42_RS03490 0.61 +1.2
775,560 + -0.5
775,628 + +0.9
775,629 - +0.7
775,803 + +0.6
775,804 - +0.4
775,829 + RR42_RS03495 0.11 -2.2
775,830 - RR42_RS03495 0.11 +0.5
776,001 - RR42_RS03495 0.20 +0.4
776,001 - RR42_RS03495 0.20 +0.6
776,001 - RR42_RS03495 0.20 -0.9
776,001 - RR42_RS03495 0.20 -0.1
776,196 - RR42_RS03495 0.30 -0.3
776,196 - RR42_RS03495 0.30 -0.1
776,264 + RR42_RS03495 0.34 +0.4
776,264 + RR42_RS03495 0.34 -0.8
776,265 - RR42_RS03495 0.34 -0.5
776,265 - RR42_RS03495 0.34 -0.4
776,282 + RR42_RS03495 0.35 +0.4
776,282 + RR42_RS03495 0.35 -0.0
776,438 + RR42_RS03495 0.43 +0.2
776,438 + RR42_RS03495 0.43 -0.2

Or see this region's nucleotide sequence