Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02855 and RR42_RS02860 are separated by 94 nucleotides RR42_RS02860 and RR42_RS02865 are separated by 123 nucleotides
RR42_RS02855: RR42_RS02855 - dimethylallyladenosine tRNA methylthiotransferase, at 636,191 to 637,543
_RS02855
RR42_RS02860: RR42_RS02860 - hypothetical protein, at 637,638 to 638,018
_RS02860
RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830
_RS02865
Position (kb) 637
638
639 Strain fitness (log2 ratio) -1
0
1
2 at 636.688 kb on - strand, within RR42_RS02855 at 636.789 kb on + strand, within RR42_RS02855 at 636.790 kb on - strand, within RR42_RS02855 at 636.790 kb on - strand, within RR42_RS02855 at 636.790 kb on - strand, within RR42_RS02855 at 636.838 kb on - strand, within RR42_RS02855 at 636.931 kb on - strand, within RR42_RS02855 at 637.005 kb on - strand, within RR42_RS02855 at 637.005 kb on - strand, within RR42_RS02855 at 637.060 kb on - strand, within RR42_RS02855 at 637.060 kb on - strand, within RR42_RS02855 at 637.069 kb on - strand, within RR42_RS02855 at 637.069 kb on - strand, within RR42_RS02855 at 637.475 kb on - strand at 637.519 kb on - strand at 637.519 kb on - strand at 637.519 kb on - strand at 637.634 kb on - strand at 637.634 kb on - strand at 637.639 kb on + strand at 637.640 kb on - strand at 637.640 kb on - strand at 637.640 kb on - strand at 637.640 kb on - strand at 637.763 kb on + strand, within RR42_RS02860 at 637.960 kb on - strand, within RR42_RS02860 at 637.960 kb on - strand, within RR42_RS02860 at 638.106 kb on + strand at 638.107 kb on - strand at 638.107 kb on - strand at 638.107 kb on - strand at 638.107 kb on - strand at 638.110 kb on - strand at 638.110 kb on - strand at 638.110 kb on - strand at 638.110 kb on - strand at 638.110 kb on - strand at 638.143 kb on + strand at 638.144 kb on - strand at 638.144 kb on - strand at 638.413 kb on + strand, within RR42_RS02865 at 638.413 kb on + strand, within RR42_RS02865 at 638.413 kb on + strand, within RR42_RS02865 at 638.413 kb on + strand, within RR42_RS02865 at 638.414 kb on - strand, within RR42_RS02865 at 638.419 kb on + strand, within RR42_RS02865 at 638.575 kb on + strand, within RR42_RS02865 at 638.575 kb on + strand, within RR42_RS02865 at 638.575 kb on + strand, within RR42_RS02865 at 638.576 kb on - strand, within RR42_RS02865 at 638.608 kb on + strand, within RR42_RS02865 at 638.609 kb on - strand, within RR42_RS02865 at 638.612 kb on - strand, within RR42_RS02865 at 638.902 kb on - strand, within RR42_RS02865 at 638.941 kb on + strand, within RR42_RS02865 at 638.941 kb on + strand, within RR42_RS02865 at 638.941 kb on + strand, within RR42_RS02865 at 638.941 kb on + strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865 at 638.942 kb on - strand, within RR42_RS02865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 636,688 - RR42_RS02855 0.37 -0.0 636,789 + RR42_RS02855 0.44 -0.2 636,790 - RR42_RS02855 0.44 +0.7 636,790 - RR42_RS02855 0.44 -0.1 636,790 - RR42_RS02855 0.44 -0.5 636,838 - RR42_RS02855 0.48 +0.7 636,931 - RR42_RS02855 0.55 -0.4 637,005 - RR42_RS02855 0.60 +0.3 637,005 - RR42_RS02855 0.60 -0.5 637,060 - RR42_RS02855 0.64 +0.9 637,060 - RR42_RS02855 0.64 -0.1 637,069 - RR42_RS02855 0.65 -0.8 637,069 - RR42_RS02855 0.65 +1.0 637,475 - +0.0 637,519 - +0.5 637,519 - +1.3 637,519 - +0.6 637,634 - +0.6 637,634 - +0.1 637,639 + -0.2 637,640 - -0.1 637,640 - +0.8 637,640 - -0.1 637,640 - +1.8 637,763 + RR42_RS02860 0.33 -0.7 637,960 - RR42_RS02860 0.85 -0.5 637,960 - RR42_RS02860 0.85 -0.2 638,106 + -0.8 638,107 - +0.6 638,107 - -0.3 638,107 - -1.5 638,107 - -0.6 638,110 - -0.5 638,110 - +0.3 638,110 - -0.7 638,110 - -1.3 638,110 - +1.1 638,143 + -0.0 638,144 - +1.3 638,144 - +0.2 638,413 + RR42_RS02865 0.16 -0.5 638,413 + RR42_RS02865 0.16 -1.0 638,413 + RR42_RS02865 0.16 +1.1 638,413 + RR42_RS02865 0.16 +0.9 638,414 - RR42_RS02865 0.16 +0.1 638,419 + RR42_RS02865 0.16 -1.2 638,575 + RR42_RS02865 0.26 -0.4 638,575 + RR42_RS02865 0.26 +1.3 638,575 + RR42_RS02865 0.26 -0.4 638,576 - RR42_RS02865 0.26 +0.5 638,608 + RR42_RS02865 0.28 +0.4 638,609 - RR42_RS02865 0.28 -0.7 638,612 - RR42_RS02865 0.28 +0.6 638,902 - RR42_RS02865 0.45 -0.6 638,941 + RR42_RS02865 0.47 +0.4 638,941 + RR42_RS02865 0.47 +1.3 638,941 + RR42_RS02865 0.47 +0.7 638,941 + RR42_RS02865 0.47 +0.6 638,942 - RR42_RS02865 0.47 -0.6 638,942 - RR42_RS02865 0.47 -0.1 638,942 - RR42_RS02865 0.47 +0.8 638,942 - RR42_RS02865 0.47 +0.2 638,942 - RR42_RS02865 0.47 +1.4 638,942 - RR42_RS02865 0.47 -0.3
Or see this region's nucleotide sequence