Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01920 and RR42_RS01925 are separated by 148 nucleotides RR42_RS01925 and RR42_RS01930 are separated by 99 nucleotides RR42_RS01930 and RR42_RS01935 are separated by 364 nucleotides
RR42_RS01920: RR42_RS01920 - protoheme IX farnesyltransferase, at 430,722 to 431,657
_RS01920
RR42_RS01925: RR42_RS01925 - photosynthetic protein synthase I, at 431,806 to 432,432
_RS01925
RR42_RS01930: RR42_RS01930 - RNA polymerase factor sigma-32, at 432,532 to 433,461
_RS01930
RR42_RS01935: RR42_RS01935 - pirin, at 433,826 to 434,701
_RS01935
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 431.548 kb on - strand, within RR42_RS01920 at 431.592 kb on + strand at 431.592 kb on + strand at 431.592 kb on + strand at 431.631 kb on + strand at 431.631 kb on + strand at 431.632 kb on - strand at 431.632 kb on - strand at 431.738 kb on + strand at 431.739 kb on - strand at 431.739 kb on - strand at 431.739 kb on - strand at 432.046 kb on - strand, within RR42_RS01925 at 432.046 kb on - strand, within RR42_RS01925 at 432.046 kb on - strand, within RR42_RS01925 at 432.165 kb on + strand, within RR42_RS01925 at 432.165 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.187 kb on + strand, within RR42_RS01925 at 432.188 kb on - strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.277 kb on + strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.311 kb on - strand, within RR42_RS01925 at 432.337 kb on + strand, within RR42_RS01925 at 432.337 kb on + strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.338 kb on - strand, within RR42_RS01925 at 432.477 kb on + strand at 432.511 kb on + strand at 432.512 kb on - strand at 432.526 kb on + strand at 432.526 kb on + strand at 432.526 kb on + strand at 432.527 kb on - strand at 432.527 kb on - strand at 432.527 kb on - strand at 433.448 kb on - strand at 433.543 kb on + strand at 433.543 kb on + strand at 433.547 kb on - strand at 433.569 kb on + strand at 433.594 kb on + strand at 433.621 kb on + strand at 433.622 kb on - strand at 433.667 kb on + strand at 433.703 kb on + strand at 433.704 kb on - strand at 433.704 kb on - strand at 433.704 kb on - strand at 433.757 kb on + strand at 433.765 kb on - strand at 433.822 kb on + strand at 433.849 kb on - strand at 433.859 kb on - strand at 434.024 kb on + strand, within RR42_RS01935 at 434.024 kb on + strand, within RR42_RS01935 at 434.024 kb on + strand, within RR42_RS01935 at 434.025 kb on - strand, within RR42_RS01935 at 434.025 kb on - strand, within RR42_RS01935 at 434.025 kb on - strand, within RR42_RS01935 at 434.025 kb on - strand, within RR42_RS01935 at 434.280 kb on + strand, within RR42_RS01935 at 434.281 kb on - strand, within RR42_RS01935 at 434.351 kb on + strand, within RR42_RS01935 at 434.351 kb on + strand, within RR42_RS01935 at 434.351 kb on + strand, within RR42_RS01935 at 434.352 kb on - strand, within RR42_RS01935 at 434.355 kb on + strand, within RR42_RS01935 at 434.355 kb on + strand, within RR42_RS01935 at 434.356 kb on - strand, within RR42_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 431,548 - RR42_RS01920 0.88 -1.2 431,592 + -1.4 431,592 + -1.1 431,592 + -3.4 431,631 + +0.8 431,631 + -0.8 431,632 - -0.6 431,632 - -0.3 431,738 + -0.5 431,739 - +1.8 431,739 - -1.1 431,739 - -0.4 432,046 - RR42_RS01925 0.38 +1.7 432,046 - RR42_RS01925 0.38 -0.2 432,046 - RR42_RS01925 0.38 +0.4 432,165 + RR42_RS01925 0.57 -0.5 432,165 + RR42_RS01925 0.57 +0.1 432,187 + RR42_RS01925 0.61 -1.4 432,187 + RR42_RS01925 0.61 +0.4 432,187 + RR42_RS01925 0.61 +0.4 432,187 + RR42_RS01925 0.61 -0.7 432,188 - RR42_RS01925 0.61 -0.6 432,277 + RR42_RS01925 0.75 -1.1 432,277 + RR42_RS01925 0.75 +2.1 432,277 + RR42_RS01925 0.75 -1.0 432,311 - RR42_RS01925 0.81 +1.0 432,311 - RR42_RS01925 0.81 +0.0 432,311 - RR42_RS01925 0.81 +0.3 432,337 + RR42_RS01925 0.85 +0.6 432,337 + RR42_RS01925 0.85 -1.2 432,338 - RR42_RS01925 0.85 +0.4 432,338 - RR42_RS01925 0.85 -0.3 432,338 - RR42_RS01925 0.85 +1.1 432,338 - RR42_RS01925 0.85 +1.5 432,477 + -0.5 432,511 + +0.7 432,512 - +0.7 432,526 + -0.4 432,526 + +0.1 432,526 + -0.1 432,527 - -0.1 432,527 - +0.8 432,527 - +0.2 433,448 - -1.3 433,543 + -0.3 433,543 + +3.1 433,547 - -1.0 433,569 + -0.2 433,594 + +0.9 433,621 + +1.3 433,622 - +0.2 433,667 + -0.9 433,703 + +1.3 433,704 - +0.5 433,704 - +1.2 433,704 - +0.5 433,757 + -1.9 433,765 - +0.8 433,822 + +1.7 433,849 - -0.4 433,859 - +0.2 434,024 + RR42_RS01935 0.23 +0.5 434,024 + RR42_RS01935 0.23 -0.2 434,024 + RR42_RS01935 0.23 -0.3 434,025 - RR42_RS01935 0.23 -0.3 434,025 - RR42_RS01935 0.23 -0.3 434,025 - RR42_RS01935 0.23 +1.5 434,025 - RR42_RS01935 0.23 -3.1 434,280 + RR42_RS01935 0.52 +0.1 434,281 - RR42_RS01935 0.52 -0.0 434,351 + RR42_RS01935 0.60 -0.3 434,351 + RR42_RS01935 0.60 +0.2 434,351 + RR42_RS01935 0.60 -0.5 434,352 - RR42_RS01935 0.60 -0.9 434,355 + RR42_RS01935 0.60 -0.6 434,355 + RR42_RS01935 0.60 +0.6 434,356 - RR42_RS01935 0.61 +0.7
Or see this region's nucleotide sequence