Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03685 and MMJJ_RS03690 overlap by 4 nucleotides MMJJ_RS03690 and MMJJ_RS03695 overlap by 8 nucleotides
MMJJ_RS03685: MMJJ_RS03685 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 689,060 to 690,898
_RS03685
MMJJ_RS03690: MMJJ_RS03690 - indolepyruvate oxidoreductase subunit beta, at 690,895 to 691,494
_RS03690
MMJJ_RS03695: MMJJ_RS03695 - phenylacetate--CoA ligase, at 691,487 to 692,731
_RS03695
Position (kb) 690
691
692 Strain fitness (log2 ratio) -1
0
1
2 at 689.914 kb on + strand, within MMJJ_RS03685 at 689.938 kb on + strand, within MMJJ_RS03685 at 689.949 kb on - strand, within MMJJ_RS03685 at 690.036 kb on - strand, within MMJJ_RS03685 at 690.037 kb on + strand, within MMJJ_RS03685 at 690.066 kb on - strand, within MMJJ_RS03685 at 690.078 kb on - strand, within MMJJ_RS03685 at 690.119 kb on + strand, within MMJJ_RS03685 at 690.129 kb on - strand, within MMJJ_RS03685 at 690.191 kb on - strand, within MMJJ_RS03685 at 690.256 kb on - strand, within MMJJ_RS03685 at 690.266 kb on - strand, within MMJJ_RS03685 at 690.267 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.304 kb on - strand, within MMJJ_RS03685 at 690.305 kb on + strand, within MMJJ_RS03685 at 690.331 kb on - strand, within MMJJ_RS03685 at 690.332 kb on + strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.427 kb on + strand, within MMJJ_RS03685 at 690.430 kb on - strand, within MMJJ_RS03685 at 690.431 kb on + strand, within MMJJ_RS03685 at 690.441 kb on + strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.544 kb on - strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.659 kb on - strand, within MMJJ_RS03685 at 690.661 kb on - strand, within MMJJ_RS03685 at 690.749 kb on + strand at 690.749 kb on + strand at 690.751 kb on + strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.876 kb on - strand at 690.908 kb on - strand at 690.912 kb on + strand at 690.912 kb on + strand at 690.996 kb on - strand, within MMJJ_RS03690 at 691.040 kb on - strand, within MMJJ_RS03690 at 691.107 kb on + strand, within MMJJ_RS03690 at 691.110 kb on + strand, within MMJJ_RS03690 at 691.222 kb on - strand, within MMJJ_RS03690 at 691.223 kb on + strand, within MMJJ_RS03690 at 691.254 kb on - strand, within MMJJ_RS03690 at 691.255 kb on + strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.354 kb on - strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.432 kb on + strand, within MMJJ_RS03690 at 691.492 kb on - strand at 691.495 kb on - strand at 691.511 kb on - strand at 691.590 kb on - strand at 691.591 kb on + strand at 691.656 kb on - strand, within MMJJ_RS03695 at 691.713 kb on - strand, within MMJJ_RS03695 at 691.757 kb on - strand, within MMJJ_RS03695 at 691.758 kb on + strand, within MMJJ_RS03695 at 691.805 kb on - strand, within MMJJ_RS03695 at 691.806 kb on + strand, within MMJJ_RS03695 at 691.834 kb on - strand at 691.835 kb on + strand, within MMJJ_RS03695 at 691.839 kb on - strand, within MMJJ_RS03695 at 691.891 kb on + strand, within MMJJ_RS03695 at 691.993 kb on - strand, within MMJJ_RS03695 at 691.994 kb on + strand, within MMJJ_RS03695 at 691.994 kb on + strand, within MMJJ_RS03695 at 692.003 kb on - strand at 692.028 kb on - strand, within MMJJ_RS03695 at 692.067 kb on - strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.111 kb on + strand, within MMJJ_RS03695 at 692.144 kb on - strand, within MMJJ_RS03695 at 692.166 kb on - strand, within MMJJ_RS03695 at 692.167 kb on + strand, within MMJJ_RS03695 at 692.168 kb on - strand, within MMJJ_RS03695 at 692.169 kb on + strand, within MMJJ_RS03695 at 692.216 kb on - strand, within MMJJ_RS03695 at 692.232 kb on - strand, within MMJJ_RS03695 at 692.233 kb on + strand, within MMJJ_RS03695 at 692.235 kb on - strand, within MMJJ_RS03695 at 692.257 kb on - strand, within MMJJ_RS03695 at 692.298 kb on - strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.312 kb on + strand, within MMJJ_RS03695 at 692.333 kb on + strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.335 kb on + strand, within MMJJ_RS03695 at 692.340 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.434 kb on - strand, within MMJJ_RS03695 at 692.446 kb on + strand, within MMJJ_RS03695 at 692.455 kb on + strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.463 kb on + strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.487 kb on - strand, within MMJJ_RS03695 at 692.488 kb on + strand, within MMJJ_RS03695 at 692.491 kb on - strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE remove 689,914 + MMJJ_RS03685 0.46 -0.2 689,938 + MMJJ_RS03685 0.48 +0.3 689,949 - MMJJ_RS03685 0.48 -0.4 690,036 - MMJJ_RS03685 0.53 +0.0 690,037 + MMJJ_RS03685 0.53 +0.2 690,066 - MMJJ_RS03685 0.55 -0.0 690,078 - MMJJ_RS03685 0.55 +0.1 690,119 + MMJJ_RS03685 0.58 +0.1 690,129 - MMJJ_RS03685 0.58 -0.9 690,191 - MMJJ_RS03685 0.62 -0.2 690,256 - MMJJ_RS03685 0.65 +0.1 690,266 - MMJJ_RS03685 0.66 -0.6 690,267 + MMJJ_RS03685 0.66 +0.2 690,292 + MMJJ_RS03685 0.67 +0.7 690,292 + MMJJ_RS03685 0.67 -0.6 690,304 - MMJJ_RS03685 0.68 -0.4 690,305 + MMJJ_RS03685 0.68 -0.7 690,331 - MMJJ_RS03685 0.69 -0.2 690,332 + MMJJ_RS03685 0.69 -0.0 690,385 - MMJJ_RS03685 0.72 -0.6 690,385 - MMJJ_RS03685 0.72 +0.1 690,426 - MMJJ_RS03685 0.74 -0.8 690,426 - MMJJ_RS03685 0.74 -0.0 690,427 + MMJJ_RS03685 0.74 -1.0 690,430 - MMJJ_RS03685 0.74 +0.1 690,431 + MMJJ_RS03685 0.75 -0.8 690,441 + MMJJ_RS03685 0.75 +0.3 690,457 - MMJJ_RS03685 0.76 +0.3 690,457 - MMJJ_RS03685 0.76 +0.2 690,544 - MMJJ_RS03685 0.81 +1.4 690,545 + MMJJ_RS03685 0.81 +0.1 690,545 + MMJJ_RS03685 0.81 -0.4 690,631 - MMJJ_RS03685 0.85 +1.4 690,631 - MMJJ_RS03685 0.85 -0.0 690,631 - MMJJ_RS03685 0.85 +0.1 690,653 + MMJJ_RS03685 0.87 -0.3 690,653 + MMJJ_RS03685 0.87 -0.3 690,659 - MMJJ_RS03685 0.87 -0.2 690,661 - MMJJ_RS03685 0.87 +0.4 690,749 + -0.0 690,749 + +0.4 690,751 + +0.4 690,796 - -0.5 690,796 - +0.3 690,796 - +0.3 690,796 - -0.4 690,797 + -0.3 690,797 + -0.4 690,797 + +0.0 690,797 + +0.4 690,797 + -0.6 690,797 + +1.1 690,876 - -0.4 690,908 - -0.7 690,912 + -1.0 690,912 + -0.7 690,996 - MMJJ_RS03690 0.17 +0.8 691,040 - MMJJ_RS03690 0.24 -0.0 691,107 + MMJJ_RS03690 0.35 -0.2 691,110 + MMJJ_RS03690 0.36 -0.0 691,222 - MMJJ_RS03690 0.55 +0.2 691,223 + MMJJ_RS03690 0.55 -0.2 691,254 - MMJJ_RS03690 0.60 +0.3 691,255 + MMJJ_RS03690 0.60 +0.2 691,258 - MMJJ_RS03690 0.60 -0.1 691,258 - MMJJ_RS03690 0.60 -0.4 691,258 - MMJJ_RS03690 0.60 +0.8 691,259 + MMJJ_RS03690 0.61 +0.1 691,259 + MMJJ_RS03690 0.61 +0.0 691,354 - MMJJ_RS03690 0.77 +0.7 691,379 + MMJJ_RS03690 0.81 -0.2 691,379 + MMJJ_RS03690 0.81 +0.7 691,432 + MMJJ_RS03690 0.90 +0.0 691,492 - +0.7 691,495 - -0.3 691,511 - -0.5 691,590 - -0.3 691,591 + +0.2 691,656 - MMJJ_RS03695 0.14 -0.5 691,713 - MMJJ_RS03695 0.18 -0.7 691,757 - MMJJ_RS03695 0.22 -0.0 691,758 + MMJJ_RS03695 0.22 +1.0 691,805 - MMJJ_RS03695 0.26 +0.1 691,806 + MMJJ_RS03695 0.26 +0.4 691,834 - +2.0 691,835 + MMJJ_RS03695 0.28 +0.1 691,839 - MMJJ_RS03695 0.28 -0.0 691,891 + MMJJ_RS03695 0.32 +1.0 691,993 - MMJJ_RS03695 0.41 +0.6 691,994 + MMJJ_RS03695 0.41 +0.2 691,994 + MMJJ_RS03695 0.41 +0.1 692,003 - -1.0 692,028 - MMJJ_RS03695 0.43 +1.1 692,067 - MMJJ_RS03695 0.47 -0.1 692,074 + MMJJ_RS03695 0.47 -0.3 692,074 + MMJJ_RS03695 0.47 -0.1 692,111 + MMJJ_RS03695 0.50 +0.4 692,144 - MMJJ_RS03695 0.53 +0.4 692,166 - MMJJ_RS03695 0.55 +0.1 692,167 + MMJJ_RS03695 0.55 +0.2 692,168 - MMJJ_RS03695 0.55 +0.1 692,169 + MMJJ_RS03695 0.55 -0.2 692,216 - MMJJ_RS03695 0.59 -0.2 692,232 - MMJJ_RS03695 0.60 -0.5 692,233 + MMJJ_RS03695 0.60 -0.1 692,235 - MMJJ_RS03695 0.60 +1.0 692,257 - MMJJ_RS03695 0.62 +0.2 692,298 - MMJJ_RS03695 0.65 -0.9 692,299 + MMJJ_RS03695 0.65 +0.3 692,299 + MMJJ_RS03695 0.65 -0.1 692,312 + MMJJ_RS03695 0.66 +0.3 692,333 + MMJJ_RS03695 0.68 +0.2 692,334 - MMJJ_RS03695 0.68 +0.6 692,334 - MMJJ_RS03695 0.68 -0.1 692,335 + MMJJ_RS03695 0.68 -0.3 692,340 + MMJJ_RS03695 0.69 +0.3 692,381 + MMJJ_RS03695 0.72 -0.2 692,381 + MMJJ_RS03695 0.72 +0.2 692,434 - MMJJ_RS03695 0.76 +0.8 692,446 + MMJJ_RS03695 0.77 -0.5 692,455 + MMJJ_RS03695 0.78 -0.4 692,458 - MMJJ_RS03695 0.78 +0.3 692,458 - MMJJ_RS03695 0.78 -0.6 692,458 - MMJJ_RS03695 0.78 -0.4 692,458 - MMJJ_RS03695 0.78 -0.2 692,458 - MMJJ_RS03695 0.78 -0.2 692,458 - MMJJ_RS03695 0.78 +0.2 692,459 + MMJJ_RS03695 0.78 +0.5 692,459 + MMJJ_RS03695 0.78 -0.0 692,461 + MMJJ_RS03695 0.78 -1.2 692,461 + MMJJ_RS03695 0.78 +0.4 692,461 + MMJJ_RS03695 0.78 +0.6 692,463 + MMJJ_RS03695 0.78 -0.3 692,484 - MMJJ_RS03695 0.80 -0.2 692,484 - MMJJ_RS03695 0.80 +0.5 692,487 - MMJJ_RS03695 0.80 -0.5 692,488 + MMJJ_RS03695 0.80 -0.5 692,491 - MMJJ_RS03695 0.81 -0.0 692,492 + MMJJ_RS03695 0.81 -0.6 692,492 + MMJJ_RS03695 0.81 -0.5
Or see this region's nucleotide sequence